Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3542 ATGAACATGCTCAGGTATGAATACACAACCACTTTACTACTCTTGTTTTTGTTCTGTCCTATGGTTTTGTCTTTGCTGTCTCAAAACCAAACAAACACCATGACCACTCTCTCCAATCTTCTTAGCATCCCTGGTTGGAATATCACCATACAATCCAATCCATGTACATGGAAAGGTGTCACTTGTGATCTTACCAATTCATCTGTCATTATGATTGATGTTTCTAAGAACCAACTGAGCTCTATCCCAGATGGGTTTATTTCTGCATGTGGAAAAATTGAGAGTTTAAAGCTTTTAAATTTCAGTGGAAATGTGTTAAGTGGTTTTTTGCCTTCTTTTCATGGTTTTCCTGAATTGGAAACACTTGACATGTCTTTCAATAATTTGAGCGGAAACATTAGTATGCAGTTAGATGGAATGGTTAGTCTCAAGATTTTGAATCTCAGTTACAATAACTTCATTGGAAAAATTCCTACTAAACTTGGAAGCTCCATGGTTTTGGAGGAGCTTGTGCTTTCAAACAATAGTTTTCAAGGAACAATCCCTGATCAAATTTTGAGCTACAAAAATTTGACTATGATTGATTTTAAGTCAAATATACTTTCAGGGTCTATTCCTTTAGATATTGGAAATCTGTCCAAATTGGAAACATTGAGTCTTTCCTCTAATAATCTTGGTGGCAATATCCCAATGTCACTCATGAGTATCACAACACTAGTAAGATTTGCAGCTAATCTAAATAGTTTTACTGGTGCTATTCCTCTTGGAATTACAAAATTCCTCAGTTATTTGGATCTTAGTTATAATGATTTGTCCGGGTCAATTCCAGAAGGCCTTTTATCTCCATCACAGATAGTGCTAGTAGATTTGTCCAATAACATGTTAAAAGGGCCTGTACCTAGAAATATTTCTCCTAGTTTAGTCAGGTTGAGATTGGGGGAAAACTTCTTGACCGGAGAGGTTCCTTCAGGTACTTGCGGTGAAGCCGGACATGGTTTGACATATATGGAGCTGGAAAAAAATAATTTGACAGGTTTAATACCTCCTGGATTAAGTTCTTGTAAGAAATTGGCCTTGTTGAATTTGGCTGATAACCAATTGACTGGTGCATTGCCACCAGAACTTGGTAATCTTAGCAATCTTCAAGTCCTTAAACTTCAAATGAACAAGCTTAATGGTACTATTCCAATTCAAATTTCACAACTGCAACAGTTGTCTACCCTGAATTTGAGCCTGAATTCTCTGCATGGACCAATTCCATCTGAGATGTCAAACAGCCTTGTACTTCTTGACTTGCAAGGGAACAATCTCAACGGGTCTATACTGTCGTCCATTGGAAACTTGGGAAAACTTATGGAAGTCCAACTTGGAGAAAATAAGTTAAGTGGGGATATTCCAAAAATGCCTTTGAATCTACAGATTGCATTGAATCTCAGCAGCAATCAGTTTAGTGGAGCTATTCCTAGTAGTTTTGCTGATTTGGTTAACCTAGAAATTTTGGACCTCTCAAATAACAGCTTCTCCGGTGAGATTCCTCCGTCTCTAACTAAAATGGTTGCATTGACACAGTTGCAACTTTCAAACAATCATCTATCAGGTGTTCTTCCAGCATTTGGTTCATACGTTAAAGTTGATATAGGAGGAAACAATGTCAGAAACAGTAGTAATGTCTCACCCGACAATTTTCCAAGAGCAGGAAAGAAGGGGAAATCTGTTGTTGCCGCTGTTCTTATTGCAATTGCTGCTGCTATTTTTGTGGTTGGCATGGTCACCCTTCTGGTTGTATCGATGTCACTACACTGTTGCAGGGTCAATGATCAACAAGCACAGTCAAGTGAAAATGAAAATCTTGACTTTCCTCAGGTCATCCAGAGTAATTTGTTAACACCAAATGGAATCCACAGATCAAACATTGATTTCTCCAAGGTCATGGAAGTTGTTGCCAAAACGTCAAACGTAACTCTAAAAAACAAGTTTTCAACTTACTATAAGGCTGTTATGCCATCTGGTTCAATCTACTTCGCCAAGAAGCTGAACTGGTGTGACAAGGTATTTCCAGTGAGTAGTCTTGATAAATTTGGGAAAGAGCTAGATGCATTGGCAAAGTTGGACAATTCAAATGTGATGATTCCACTAGCTTATATTGTGTCCGCTAACAATGTTTATATATTATATGAGTTTCTCTCGAATGGCTCACTCTTCGATGTGCTTCATGGAGGCATGAAAAACACTTTAGATTGGGCTAGCAGATATAGTATAGCTGTTGGTGTGGCTCAAGGCCTAGATTTTCTGCATGGTTTTGCCTCTGGTCCAATACTTCTCCTTGATCTATCAAGTAAAAGTATTATGCTGAAATCGCTTGACGAGCCTCTAATTGGTGATATTGAACACTACAAGGTGATTGATCTTTCAAAGAGTACTGGGAGTCTTTGTGCGGTTGCTGGTTCTGATGGCTACATTTCTCCAGAGTATGTGTGCACCATGAAAGAGAATGTGTATAGCTTTGGGGTGATTCTACTGGAATTGCTGACCGGAAAACCCTCAGTGACTAAGGGAGCTGAATTGGTAAAGTGGGTTTTGCGTAATTCAAGAAATCAAGATTACATTCTTGATTTGAATGTCAGCAAAACATCAGAGTCTGTTAGAAACCAAATGCTTGAAATTCTGGAGATTGCTCTTGTTTGTGTAAGCACATCCCCTGATGAAAGACCAAAGATGAAGACTGTGCTAAGAATGTTGCTGAATGCCAGATAA 2754 0.3845 MNMLRYEYTTTLLLLFLFCPMVLSLLSQNQTNTMTTLSNLLSIPGWNITIQSNPCTWKGVTCDLTNSSVIMIDVSKNQLSSIPDGFISACGKIESLKLLNFSGNVLSGFLPSFHGFPELETLDMSFNNLSGNISMQLDGMVSLKILNLSYNNFIGKIPTKLGSSMVLEELVLSNNSFQGTIPDQILSYKNLTMIDFKSNILSGSIPLDIGNLSKLETLSLSSNNLGGNIPMSLMSITTLVRFAANLNSFTGAIPLGITKFLSYLDLSYNDLSGSIPEGLLSPSQIVLVDLSNNMLKGPVPRNISPSLVRLRLGENFLTGEVPSGTCGEAGHGLTYMELEKNNLTGLIPPGLSSCKKLALLNLADNQLTGALPPELGNLSNLQVLKLQMNKLNGTIPIQISQLQQLSTLNLSLNSLHGPIPSEMSNSLVLLDLQGNNLNGSILSSIGNLGKLMEVQLGENKLSGDIPKMPLNLQIALNLSSNQFSGAIPSSFADLVNLEILDLSNNSFSGEIPPSLTKMVALTQLQLSNNHLSGVLPAFGSYVKVDIGGNNVRNSSNVSPDNFPRAGKKGKSVVAAVLIAIAAAIFVVGMVTLLVVSMSLHCCRVNDQQAQSSENENLDFPQVIQSNLLTPNGIHRSNIDFSKVMEVVAKTSNVTLKNKFSTYYKAVMPSGSIYFAKKLNWCDKVFPVSSLDKFGKELDALAKLDNSNVMIPLAYIVSANNVYILYEFLSNGSLFDVLHGGMKNTLDWASRYSIAVGVAQGLDFLHGFASGPILLLDLSSKSIMLKSLDEPLIGDIEHYKVIDLSKSTGSLCAVAGSDGYISPEYVCTMKENVYSFGVILLELLTGKPSVTKGAELVKWVLRNSRNQDYILDLNVSKTSESVRNQMLEILEIALVCVSTSPDERPKMKTVLRMLLNAR* 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3542 917 PRINTS Leucine-rich repeat signature 261 274 - -
Mtr1g3542 917 PRINTS Leucine-rich repeat signature 494 507 - -
Mtr1g3542 917 Gene3D Transferase(Phosphotransferase) domain 1 639 916 - -
Mtr1g3542 917 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 11 914 - -
Mtr1g3542 917 SUPERFAMILY L domain-like 35 300 - -
Mtr1g3542 917 Pfam Leucine Rich repeat 213 228 IPR001611 GO:0005515
Mtr1g3542 917 SUPERFAMILY Protein kinase-like (PK-like) 658 913 IPR011009 -
Mtr1g3542 917 SUPERFAMILY RNI-like 245 551 - -
Mtr1g3542 917 SMART LRR_typ_2 212 235 IPR003591 -
Mtr1g3542 917 SMART LRR_typ_2 494 517 IPR003591 -
Mtr1g3542 917 SMART LRR_typ_2 378 402 IPR003591 -
Mtr1g3542 917 SMART LRR_typ_2 518 540 IPR003591 -
Mtr1g3542 917 SMART LRR_typ_2 140 164 IPR003591 -
Mtr1g3542 917 Pfam Protein kinase domain 659 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3542 917 Pfam Leucine rich repeat 476 531 IPR001611 GO:0005515
Mtr1g3542 917 Pfam Leucine rich repeat 72 129 IPR001611 GO:0005515
Mtr1g3542 917 Gene3D Ribonuclease Inhibitor 186 257 IPR032675 -
Mtr1g3542 917 Gene3D Ribonuclease Inhibitor 473 554 IPR032675 -
Mtr1g3542 917 Gene3D Ribonuclease Inhibitor 258 472 IPR032675 -
Mtr1g3542 917 Gene3D Ribonuclease Inhibitor 24 185 IPR032675 -
Mtr1g3542 917 ProSiteProfiles Protein kinase domain profile. 648 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3542 917 PANTHER F12K21.25 11 914 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3542 Mtr-Chr1 46988570 46996647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3542 33 917 Receptor kinase-like Gene Family AT2G41820 35.878 1.31e-142 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mtr1g3542 Pkinase 6.5e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3542 - - mtr:MTR_1g096260 1438.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3542 1 46988570 46996647 Mtr1g3542 1 46988570 46996647 ECH