Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3539 ATGAATCCAACTGGAAGCTTGTGTGCTAACAACTGGGCAAGGTCCTCTTCTTCCTTGGCCCCTACTCGGAATGGATTACAAACGAATTTGTCCTCAGATCCTTCCCCTTTTTATAGGGTGGGAATTGAAACACCTTTCAAAGAAATCAACCAACCATCTCGAACTCCGTCTGTGATTCCGGGTGAATCTAACATTGATATTAAGATCACTGATCAGGAAACAAGTAAACTTCAAGATTGGGATTCTAGTGTTATGTTGAATAAGCTTTCGTTTTTGGAAGAAAAGGTTCATCAGCTCCAGGATCTAGTGCATTTGATTGATACTAAGAAGTGTCAACCTTTTGAACAACCTTGTGAACTTGTGACTCAAGAACAACAACTCATCACAGCTGATTTAACATCAATTATTGTTCAGTTGATCTCTACTGCAGGGAGTCTTCTCCCTTCTGCTAGGAACACCGTTACAAACACAAGTCCATTGCTTGGACAGCTTAGCCAGCTTCACGGGATTAGCCTTCCTTTTGGAACAGGCACAAGTTGTGGTATTCAGCCACAAAATAATAGTGCTAATACATTTTTCGATCAGTCTATTCAGAACAATGTACCTAATAATTGTGAAATGGGGCAAAACAATACTGTGGAAGAACATGAACATAAAGACGAAGAAGATATGGAAGAGGGAGAGAATCTTGCTCCTGGTTCATATGAGATTTTACAACTAGAAAAAGAAGAAATCCTTGCACCTCACACACATTTCTGTACAATCTGTGGCAAGGGCTTCAAGAGGGATGCAAATCTTCGAATGCACATGCGAGGCCATGGTGATGAATACAAAACTCCAGCAGCCCTTGCAAAACCACACAAAGAAACTGGGTCCGAACCGAAGCTTATCAAGAGGTATTCGTGTCCCTATGGTGGCTGCAAGCGTAACAAGGATCACAAGAAATTTCAGCCTCTGAAGACTATTTTATGTGTCAAAAACCACTACAAAAGAACACACTGTGATAAGAGTTACACTTGCAGCAGATGCCACACGAAGAAGTTTTCAGTCATGGCAGATCTGAAAACTCATGAGAAACATTGTGGCAAGGATAAATGGCTCTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTCGGACACATTGCTCTTTTCCAAGGCCATACACCGGCTATTCCTTTGGAAGACAACAAAGTATCTGCCGAGCCACCTGATCGATGTGATACCAGAGAAAACAGTGCTATGGTAGGAAGCACGAACTTCTGTTTTGGATCAAATCCTTCAAGTGAAAATGGAGTTGATGGCATTATGGATGTGAAAGGTAATATTGATGATCCTATCAATTATTTCTCATCTTTGAACTTTGAAGGCTGTAACTTTGGTGGGTTTAATGAATTTCCCCAACCTCCATTTGAAGATTCAGAAGGCTCTTTCTCTTTTCTCATGTCGGGTTCGTTTAACTATGCTCCTAAAGCTGGTGGTGAATCATGTTCTGACAATCTGTAA 1512 0.4101 MNPTGSLCANNWARSSSSLAPTRNGLQTNLSSDPSPFYRVGIETPFKEINQPSRTPSVIPGESNIDIKITDQETSKLQDWDSSVMLNKLSFLEEKVHQLQDLVHLIDTKKCQPFEQPCELVTQEQQLITADLTSIIVQLISTAGSLLPSARNTVTNTSPLLGQLSQLHGISLPFGTGTSCGIQPQNNSANTFFDQSIQNNVPNNCEMGQNNTVEEHEHKDEEDMEEGENLAPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYGGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEDNKVSAEPPDRCDTRENSAMVGSTNFCFGSNPSSENGVDGIMDVKGNIDDPINYFSSLNFEGCNFGGFNEFPQPPFEDSEGSFSFLMSGSFNYAPKAGGESCSDNL* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3539 503 ProSiteProfiles Zinc finger C2H2 type domain profile. 251 278 IPR013087 -
Mtr1g3539 503 ProSitePatterns Zinc finger C2H2 type domain signature. 253 273 IPR013087 -
Mtr1g3539 503 SMART c2h2final6 300 333 IPR013087 -
Mtr1g3539 503 SMART c2h2final6 338 360 IPR013087 -
Mtr1g3539 503 SMART c2h2final6 251 273 IPR013087 -
Mtr1g3539 503 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 487 IPR044300 GO:0010044|GO:0010447
Mtr1g3539 503 Gene3D Classic Zinc Finger 235 304 - -
Mtr1g3539 503 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 487 - -
Mtr1g3539 503 SUPERFAMILY beta-beta-alpha zinc fingers 249 276 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3539 Mtr-Chr1 46962949 46965669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3539 219 501 C2H2 Transcription Factor Family AT1G34370 71.280 1.13e-142 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g3539 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3539 - - gmx:100170687 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3539 1 46962949 46965669 Mtr1g3539 1 46962949 46965669 ECH