Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3537 ATGGAAGCTGATTCAGAAGAAGATGAGCTTCTGAATCTTAGCCTTTCAGTTAATAGAGAAAGAAAAAAGAAGGGAAAAATCATCATAAGTAGAGAAAATAACAACATGATGAGTACTAATAGAAACTCCTATGAAGGCTATGAAGGAAAAATCTTTCATCTTCTTCAAATGAGAGAACAAATGCTAAGAAAAAGTACTCTCAACATTGAAGATTCAAATGGTCTTCCATTAATTCACTTACTTCTCACAACAGCAACTTCTGTTGATGAAAACAACTTGGATTCATCTCTTGAAAACCTAACAGATCTTTACCAAACAGTTTCACTCACCGGTGATTCGGTTCAACGTGTCGTCGCGTATTTCACCGATGGTTTAACTGCAAAACTCCTCACAAAAAAATCACCATTCTATGAAATGTTGATGGAAGAACCAACAATCGACGAAGAGTTTCTCGCATTCACAGATCTCTACAGAGTTTCACCCTATTTCCAATTTGCTCATTTCACTGCAAATCAAGCTATCTTGGAAGCCTTTGAAAAAGAAGAAGAGAAAAATAACCGTTCTATTCATGTTATTGATTTTGATGCTTCATATGGTTTTCAATGGCCTTCACTGATTCAATCACTTTCAGAAAAAGCAACAAGTGGCAACAGAATCTCTTTCAGATTAACTGGTTTCGGTAAGAATTTAAAAGAGCTTCAAGAAACTGAATCTAGGTTAGTTAGTTTCTCAAAAGGTTTTGGTAACATTGTTTTTGAGTTTCAAGGTTTGTTAAGAGGATCAAGAGTAATTAATTTGAGGAAGAAAAAAAATGAAACTGTGGCTGTTAATTTAGTTTCCTATTTAAACAAAATGAGTTGTTTGTTGAAAATAACTGACACATTGGGATTTGTTCATTCTCTTAACCCTTCCATTGTTGTGATTGTTGAACAAGAAGGTAGTAAAAATCCTAGTAGAACCTTCTTATCAAGATTCACAGACACATTGCATTATTTTGCAGCTATGTTTGATTCACTTGATGATTGTTTACCACTTGAGAGTATTGAGAGGTTAAGAATTGAGAAGAAGGTTTTTGGTAAAGAGATTAAAAGCATGCTTAATAACTATGATGATGTGGAAGGTGGTGTTGATTGTGCAAAATATGAAAAGATGGAAACATGGAAAAGTAGAATGGAGAATAATGGATTTGTTGGTATGAAAATGAGTTCAAAATGTTTGATACAAGCAAAATTGTTGCTTAAGATGAGAACACATTATTGTCCACTTCAATTTGAAGAAGAAGGTGGTGGTGGTTTCAGGGTTTCAGAAAGAGATGATGGAAGGGCTATCTCTTTAGGATGGCAAAATAGGTTTTTGCTTACTGTGTCAGCATGGCAATCACTTTGA 1386 0.3434 MEADSEEDELLNLSLSVNRERKKKGKIIISRENNNMMSTNRNSYEGYEGKIFHLLQMREQMLRKSTLNIEDSNGLPLIHLLLTTATSVDENNLDSSLENLTDLYQTVSLTGDSVQRVVAYFTDGLTAKLLTKKSPFYEMLMEEPTIDEEFLAFTDLYRVSPYFQFAHFTANQAILEAFEKEEEKNNRSIHVIDFDASYGFQWPSLIQSLSEKATSGNRISFRLTGFGKNLKELQETESRLVSFSKGFGNIVFEFQGLLRGSRVINLRKKKNETVAVNLVSYLNKMSCLLKITDTLGFVHSLNPSIVVIVEQEGSKNPSRTFLSRFTDTLHYFAAMFDSLDDCLPLESIERLRIEKKVFGKEIKSMLNNYDDVEGGVDCAKYEKMETWKSRMENNGFVGMKMSSKCLIQAKLLLKMRTHYCPLQFEEEGGGGFRVSERDDGRAISLGWQNRFLLTVSAWQSL* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3537 461 ProSiteProfiles GRAS family profile. 68 459 IPR005202 -
Mtr1g3537 461 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 9 459 IPR005202 -
Mtr1g3537 461 PANTHER OSJNBA0084A10.13 PROTEIN 9 459 - -
Mtr1g3537 461 Pfam GRAS domain family 77 459 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3537 Mtr-Chr1 46945113 46946965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3537 85 458 GRAS Transcription Factor Family AT3G54220 34.625 3.62e-55 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Mtr1g3537 GRAS 6.8e-89 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3537 - - gmx:100809458 752.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3537 1 46945113 46946965 Mtr1g3537 1 46945113 46946965 ECH