Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3533 ATGTCTGGTAATTCAAGTTGCACCGTTTACATAGGCAATCTGGATGAGAGGGTGACAGACAGGATATTGTATGATATATTAATTCAAGCTGGACGAGTGGTAGACTTGCACATTCCTAAAGATAAGGAATCTGAAAAACCAAAAGGTTTTGCCTTTGCAGAATATGAAACTGAGGAGATTGCAGACTATGCTGTCAGACTTTTCTCAGGCCTTGTAACACTGTACAAACGAACCCTGAAGTTTGCGATATCTGGAAGGGACAAAAATACCCCAAATAGTTCTACAGCTACTACACCCTCGTCAAATTCTTCTCAACGACCAAGGCCTTACCCTGTGCAAATAAATAGTTCAGAAAATTTTCAGCATTCCGCTAGGCAATCAATACCTGACCGATTCTCAGATCGTGCGTTAAATTATTCTCAAGTCGGAGAGCTTTTGGGGAGGAACCGTGCAACCAACCAATCTAATGCGTATGGATCTCACTTTGGTGGCAACCATTTGGACCATAGTCGGAGAGCTTTTGGGGAGGAACTGGATAACGCTAGCCGTTCCAGGCCACGCCGCCCTGATACAGTTAGCCCAATCTCTTACCCACCTTACTAA 603 0.4395 MSGNSSCTVYIGNLDERVTDRILYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEIADYAVRLFSGLVTLYKRTLKFAISGRDKNTPNSSTATTPSSNSSQRPRPYPVQINSSENFQHSARQSIPDRFSDRALNYSQVGELLGRNRATNQSNAYGSHFGGNHLDHSRRAFGEELDNASRSRPRRPDTVSPISYPPY* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3533 200 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Mtr1g3533 200 MobiDBLite consensus disorder prediction 156 200 - -
Mtr1g3533 200 SMART rrm1_1 8 82 IPR000504 GO:0003723
Mtr1g3533 200 MobiDBLite consensus disorder prediction 85 126 - -
Mtr1g3533 200 Gene3D - 2 96 IPR012677 -
Mtr1g3533 200 SUPERFAMILY RNA-binding domain, RBD 4 80 IPR035979 GO:0003676
Mtr1g3533 200 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 198 - -
Mtr1g3533 200 MobiDBLite consensus disorder prediction 165 186 - -
Mtr1g3533 200 PANTHER OS01G0876500 PROTEIN 1 198 - -
Mtr1g3533 200 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3533 6 87 Eukaryotic Initiation Factors Gene Family AT1G49760 29.268 4.46e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3533 K12831 - gmx:100803118 298.516