Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3523 ATGGAACACAAAATGAAAACCACTACTTCTCCTCCTCATCTACCAATCCCAATTCATGTTCCCATTCACACCATGCTATCAAACTCTACACCTTCTTCATCTTCTTCACCTCCTTTACAATCTCCCACACCTTTCCCTTCACCACCTTCTCAATATTCTCCTCCCTCTGCTGCTCCTCAACCACCATCTCCTCCACCACCAATTATTGTTAGCCCTTGTGCTGCCTGCAAGATTCTCCGTCGCAGGTGCGTTGAAAAGTGTGTGTTAGCTCCGTATTTTCCTCCAACTGATCCACTCAAGTTCACCATTGCTCATAGAGTCTTTGGAGCTAGCAACATCATTAAGTTCTTGCAGGAACTACCTGAACCTCAGAGAGCAGATGCAGTAAGCAGCATGGTTTATGAAGCAAATGCAAGGATAAGGGACCCAGTTTATGGGTGTGCAGGTGCAATATGTCAACTTCAAAAACAAGTTAGTGAGTTACAAACACAGCTAGCCAAAGCACAAGCTGAGTTAGTGAACATGCATTGCCAACAAGCAAATTTAGTGGCACTAATTTGCATGGAAATGAGTACTCAGTCATCACCAGACCATGACATGATAATTAATCAGCCACAACCTCATGTTGATATGAGTTGCTTTTTAGAGGACAACAATTTTGGGTCTGCTTGGGAGCCTCTTTGGACATGA 690 0.4377 MEHKMKTTTSPPHLPIPIHVPIHTMLSNSTPSSSSSPPLQSPTPFPSPPSQYSPPSAAPQPPSPPPPIIVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPEPQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQTQLAKAQAELVNMHCQQANLVALICMEMSTQSSPDHDMIINQPQPHVDMSCFLEDNNFGSAWEPLWT* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3523 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 59 226 - -
Mtr1g3523 229 Coils Coil 151 178 - -
Mtr1g3523 229 ProSiteProfiles LOB domain profile. 71 172 IPR004883 -
Mtr1g3523 229 MobiDBLite consensus disorder prediction 1 64 - -
Mtr1g3523 229 Pfam Lateral organ boundaries (LOB) domain 72 169 IPR004883 -
Mtr1g3523 229 MobiDBLite consensus disorder prediction 37 64 - -
Mtr1g3523 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 59 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3523 Mtr-Chr1 46796178 46798014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3523 68 229 AS2 family AT1G07900 68.072 7.58e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr1g3523 LOB 6.9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3523 - - gmx:100806667 309.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3523 1 46796178 46798014 Mtr1g3523 1 46796178 46798014 ECH