Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3521 ATGGAAGAAGAAGATGATTATGAGGAGTATATCCCTGTGGCCAAGCGTCGCGCCATGGAAGCTCAGAAGATTCTACAACGCAAAGGGAAAGCAACTGCTGCAATCCAAGAAGATGATTCCGAGAAACTAAAAGTGGTTGAAACTAAGCCAAGTCTACTTGTTAAGGCATCACAGTTGAAGAAAGATCAACCTGAGATCAGTGTCACAGAACAGATTGTTCAACAAGAGAAGGAGATGATTGAGAATTTGTCGGATAAGAAAACCCTTATGTCTGTTCGTGAATTAGCGAAAGGGATTACTTATACTGAGCCTTTGCCTACTGGGTGGAAGCCTCCTTTGCATATAAGGAGGATGTCGAAGAAGGATTGTGATTTGATTCAGAAACAATGGCATATAATTGTTAACGGTGAAGAGATTCCGCCCCCAATTAAGAATTTTAAGGATATGAGGTTTCCGGATCCGATTTTGAAGATGTTGAAAACCAAGGGGATTGTGCAGCCAACTCCTATTCAGGTGCAGGGTCTTCCGGTTATTTTATCTGGGAGGGATATGATTGGAATTGCTTTTACGGGTTCTGGTAAAACTTTGGTTTTTGTGCTTCCGATGATTATGATGGCAATGCAGGAGGAGATTATGATGCCGATTGTTCCTGGGGAAGGTCCGTTTGGTCTGATTATTTGTCCGTCAAGGGAATTGGCTAGGCAAACTTATGAAGTCATTGAAGAATTTTTGTTACCTTTGAAGGAAGCTGGATATCCGGAGCTCAGGCCTTTGCTTTGTATCGGTGGAATTGATATGAGATCGCAGCTTGAGATTGTCAAGAAGGGTGTTCATATAGTTGTTGCAACTCCCGGGAGGTTGAAGGATATGTTGGCCAAGAAGAAAATGAATCTCGATAACTGCAGGTATTTAACGTTAGATGAGGCTGATCGATTGGTCGATTTAGGATTTGAAGATGATATAAGAGAAGTTTTTGATCACTTCAAAGCTCAAAGGCAAACTCTCCTATTTTCTGCTACTATGCCAACCAAAATTCAGAACTTTGCTAGAAGTGCTTTGGTAAAACCTATTATTGTCAATGTGGGACGTGCAGGGGCGGCAAATCTCGATGTTATTCAGGAGGTAGAGTATGTCAAGCAAGAGGCGAAAATAGTTTACCTCCTTGAGTGCCTTCAGAAAACTCCACCCCCTGTTCTTATATTTTGTGAGAATAAGGCTGATGTTGATGACATTCATGAGTATCTTCTCTTGAAAGGAGTGGAAGCCGTGGCTATTCATGGAGGCAAGGATCAGGAAGAGAGAGAGTATGCCATCTCATCATTTAAGGCTGGAAAGAAAGATGTGTTGGTTGCAACTGATGTTGCATCCAAAGGTTTAGATTTTCCTGATATTCAACATGTCATCAACTATGACATGCCAGCTGAAATTGAAAATTATGTCCATAGGATTGGACGTACCGGAAGATGTGGCAAAACTGGTATAGCAACAACATTTATAAACAAAAACCAAAGTGAGACAACATTGCTTGATTTGAAACACCTTTTGCAAGAAGCTAAGCAGAGGATCCCCCCTGTTTTGGCTGAGCTGGTTGATCCAATGGAAGATAATGAAGAAATCACAGGCATAAGTGGTGTCAAGGGCTGTGCATATTGTGGCGGGCTTGGTCATCGTATCCGTGATTGTCCTAAATTAGAACATCAGAAGAGTGTAGCCATTGCAAATAATAGAAAGGATTATTTTGGATCTGGAGGTTACCGAGGGGAAATTTGA 1770 0.4158 MEEEDDYEEYIPVAKRRAMEAQKILQRKGKATAAIQEDDSEKLKVVETKPSLLVKASQLKKDQPEISVTEQIVQQEKEMIENLSDKKTLMSVRELAKGITYTEPLPTGWKPPLHIRRMSKKDCDLIQKQWHIIVNGEEIPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELVDPMEDNEEITGISGVKGCAYCGGLGHRIRDCPKLEHQKSVAIANNRKDYFGSGGYRGEI* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3521 589 Pfam DEAD/DEAH box helicase 168 347 IPR011545 GO:0003676|GO:0005524
Mtr1g3521 589 Pfam Zinc knuckle 547 563 IPR001878 GO:0003676|GO:0008270
Mtr1g3521 589 Gene3D - 112 363 IPR027417 -
Mtr1g3521 589 Pfam Helicase conserved C-terminal domain 383 490 IPR001650 -
Mtr1g3521 589 PANTHER BNAA06G38640D PROTEIN 8 569 - -
Mtr1g3521 589 SUPERFAMILY Retrovirus zinc finger-like domains 547 568 IPR036875 GO:0003676|GO:0008270
Mtr1g3521 589 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 175 359 IPR014001 -
Mtr1g3521 589 SMART helicmild6 409 490 IPR001650 -
Mtr1g3521 589 CDD DEADc_DDX41 155 360 IPR044113 GO:0000398|GO:0003724|GO:0005524
Mtr1g3521 589 Gene3D - 369 531 IPR027417 -
Mtr1g3521 589 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 370 530 IPR001650 -
Mtr1g3521 589 ProSiteProfiles Zinc finger CCHC-type profile. 548 563 IPR001878 GO:0003676|GO:0008270
Mtr1g3521 589 Coils Coil 501 521 - -
Mtr1g3521 589 CDD SF2_C_DEAD 371 499 - -
Mtr1g3521 589 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 144 172 IPR014014 GO:0003724
Mtr1g3521 589 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 8 569 - -
Mtr1g3521 589 SMART ultradead3 163 374 IPR014001 -
Mtr1g3521 589 SMART c2hcfinal6 547 563 IPR001878 GO:0003676|GO:0008270
Mtr1g3521 589 Coils Coil 66 86 - -
Mtr1g3521 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 505 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3521 Mtr-Chr1 46780078 46782580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3521 142 530 Eukaryotic Initiation Factors Gene Family AT3G19760 30.964 9.04e-56 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3521 K13116 - gmx:100814127 1107.82