Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3509 ATGCCGCCAGAACCATTGCCTTGGGATCGTAAGGACTTCTTCAAGGAGAGGAAGCACGACAGGTCTGAAGCGGTTGGCTCCGTGGCGAGATGGAGAGATTCTTCTCATCACCGAGATTTCAATCGTTGGGGATCCGCCGAGTTTCGCAGCCGACCACCTGGTCATGGTAAGCAGGGTGGTTGGCACATGTTTTCTGAAGAGCCTGGTCATGGTTATGGTGTTTCTCGGTCCGGCGACAAGATGTTGGAGGAAGATGGTCGGCCGTTGGTTTCACGGGGTGATGGAAAATATGGCAGAAGTAGTAGGGATAATAGAGGAGGTCCCTTTGGGCAGAGAGACTGGAGAGGTCATTCGTGGGAGGCCAGCAATGGTTCTCCAAATTTATCAAGGAGACCGCAAGATATGAATAATGAGCAGAGGTCAGTTGATGATTCCCCAACATATTCCTCTCACCCACATTCTGATTTTGTAAACACATGGGAGCAGCATAACTTGAAAGACCAGCATGCTAAGACGGGTGGTGTCAATGGGTTGGGAACAGGCCCAAGATGTGATAGAGAGAATTCTTTGAGTTCAATTGACTGGAAGCCGCTTAAATGGACCCGATCTGGAAGCTTGTCTTCTCGAGGCTCAGGTTTTAGTCACTCAAGTAGCTCAAGGAGCATGGCTGGGACAGATTCCTATGAAGGAAAGCCCAATTTGAAACACAAAAATGTCACTGCTGTTGAGTCGAATTCAGGGGAAGCCACTGCATGTGTGACATCTTCTATGCCGTCTGAAGATGCAACTTCTAGAAAGAAGCCTAGGCTAAATTGGGGCGAGGGACTTGCAAAGTACGAGAAGAAAAAAGTTGATGTACCTGATCCAGGATCAAACAAAGATGGCTCGGTTTCGTCTGCCGGTAATATGGAGCCTTGTAGTTCCATCAGCCCCAACTTAGTAGATAAAAGCCCAAAAGTTACAGGATTTTCAGACTGTGCATCTCCTGCAACTCCATCTTCCGTTGCCTGCAGTTCCTCACCAGGCGTGGATGATAAATTATTGGGAAAGGTTGGAAATGCAGACAATGATGTCAGTAATTTGACTGATTCACCTGCTCCTGGTTTTCAGAATCACCTGCAGAAGTTTTATCTTAACCTTGATAAGTTGGATGTTGACTCCTTGAATAGTTTGGGCTCTTCAATTGTTGAGTTAGTACAGTCTGATGATCCAAGTTCTGACGATTCTGGTCTAGTTCGGTCCAATGCTATTAATAAGTTGCTGATATGGAAAGCTGACATTTCGAAGGTATTGGAGATGACTGAATCTGAAATTGATTTGCTTGAAAATGAACTGAAGTCTCTAAAATCTGAATCTGTGGATAGATCTGAGTGTCCAGTAGCATCGGGCTCCCAGCAGGCAGATAGCAGTTCAAAGTTTTACGAAGAGCGTGTTGAAGTCTCTCAGAAGGTCATTCGGCCAGTACCATTGAAAATTATTTCTTCTGATGAACCCAATACAGTGAAGATGCCCCAGTCAACTAATTTATGTAGCATTCATGAAAATGACAAGGAAGAGGATATCGATAGTCCTGGATCAGCAACATCTAAATTTGTTGAGCCTCTTCCTGTAAATGCAGTTTCTTCAAGTTATACCAGGGGCTATGATAACTTATCAAGGGACATGAATGCCGTTCAATCTACTATGATGAAATGCTTTGTCCGCTGTAATAGGAAAAATACTAGTGTATCTGCCTGTAATAATGTCAATACACCTACAGAAGTAAAGGATAGCTTAGGTGATGTTACCTTTGGAGCAAACTTATGTTCTAGCTACGGGGATACTTATAAGTCAATTATTGCTTCAAATAAAGAATCTGCTAACAGAGCGCACAAACTATTTACCAAGTTAGTTCCCAAAGAATGTAAAAAGCATGGTAACATGGGAGTCAGCAATGATTCGTTCTCTCATACATCGATTCTGCAAAAATTTGCCGAGAAAAAACAGTTTGAAAGATTTAAGGAGAGAGTTATTGCACTCAAGTTCAAAGCCTTGCATCACTTGTGGAAAGAAGATATGCGCCTACTGTCTATTAGGAAATGCCGCCCAAAATCGCATAAGAAAAATGAACTAAATGTGCGAACTACCTGTAGCAGTAATATGAAGAACCGATCTTCCATTCGTTCACGGTTTACTTTCCCTGCTGGAAACCATCTAAGCTTGGTTCCAACAACAGAGATTATTAATTTCACAAGCAAACTTCTGTCAGAATCTCAAGCACAACTTCAGAGAAACACCCTGAAGATGCCTGCATTAATATTGGACGAGAAGGAGAAGATGGTTACAAAGTTCATATCTAGTAATGGGCTGGTTGAAGATCCGTTGGCTATTGAGAAAGAAAGGAGTATGATCAATCCTTGGACATCAGAAGAGAAAGAACTATTCTTGGAGAAATTTGCTGCATTTGGAAAAGATTTCCGGAAAATTGCTTCTTTCCTTGATCACAAGACAACTGCAGACTGCATTGAGTTCTACTACAAGAATCACAAATCCGAATGTTTTGAGAAACTGAAGAGGAAAGATATTGGTAAGCTAGGGAAGTCATATGCAGCTAAAACTAACTTGATGGCATCAGGTAATAAAAGGATGCGAGGAAGAAGATACCTTCTGGGATATGGTAATGTAAAAGCATCAAGGGGTGAGGACAGCATTATAGAGAGATCAAACAGTTTTGACACTCTTGGGGATGAAAGGGAGACTGCTGCTGCAGCTGATGTATTGGCTGGTATATGTGGTTCATTTTCATCCGAGGCTATGAGTTCTTGCATAACAAGTTCAATTGATCCTGTAGATGGTAACAAGGAAACGAAGTTCTTGAAAGCAAACCCTCTATTCAAACAACCCTTGACACCTGATATTTCGCAGAATGCTGATGATGAGACTTGTTCAGATGAGAGCTGTGGCGAAGCTACTGAGTGGACAGATGATGAGACAGCAGCTTTTCTTCAGGCTGTATCATCTTTTGGTAAGGATTTTGAGAAGATATCACGGTGTGTAGGTACAAAGGCCCAAGAACATTGCAAACGTTTCTTCAGCAAGACTCGGAAATGTCTTGGATTGAATCTCGCAAACCCCGTACCTGGAATTAACGGATCCCCGTTGAATGATGATGCAAATGGCGGTGAGAGTGATACAGATGATGCATGTGTTGTTGAGGCAGGCTCAGTGGTTGATGCTGATAAGTCTGGAAATAAAACAGACGAGGACCTGCCTTCTGATGCCTTGAATACATTCCATGATGAATCCAATCCTCTGGAAGCTACGAGCCTGTCTGCTAAATTAAATGAATCAAGAGAAATCAGTGGGACCGAAGTATGTCTTGAAAATGTAGATGTGGCTTCCGTTGCTTGTGCAATTAATGTTGAATCTAAGCTGGGCTCTGATGTTAGTGGAGTTGGCTTGTGCACAACTGACAAGTCTGGTTCAGTCAATGGAGTTGGCTTGGGAGGTACAGTTAGAGAATCTATTTCTGCTTCAGAAATAATTAAACCAAGGGAGTGTGGTTCTGTTGCTTTGGATAGAACGGTTTCCGAGGGTTCTTCTGGGGGTCTTTGTCTTGGAAGTGAAGTGGAAAGGCAAAGAGTGTCAGCACCCCACTGTGTTGTTGACAAAGATGTTGAACATGTAGCAGATGCAGGTGTTGTAGTTGAGTTGAAAAACTGTGTCTTAGAATCGAGCACTGCGGCAAATGTTTCATTCTCACCTGTGGTCAATTCATGTTCAGGATTGAGTTTTGGTTCTGAAAATAAGCATGTCTCCTTTGGAAAGCCTCATACGTCAGCACTGTCTATGAGTATGAGTGATCTTCAGGCAACTGCAAATTCATTGTTGCTAAAAGCTGCCGCTGCTCAATGTGAGAAAACAGTTAGCCAGGATAGACTGTCCTCTACTTGTGATATTCAGGGAGGTAGAGATATGCGGTGTCATAGCTCTGGTAGTAATGGTGACCATCAGCTTCCTCTTTCCGGGAGCCATGTTGAGACTGTTAGTGTTCTCCAGGGCTATTCCATGCAAGTGCCCATCAAAAAAGAAGTGGATGGGGATGTGAATTGCAGCAGTTCAGCAGCTGAGTTTCCTCTTCTACCCCAAAAGGTCAAACAGACTGATGGTCATTTCAAACCATCATTTCATTCTTCAAATTCAGAAAAAACATCCAGAAATGGTGACGTGAAACTGTTTGGAAAGATATTAACCAATCCATCTTCCACTCAGAATCCTAATTTGACTGCGAAGCGAAGTGAAGAAAACGGTTCCCATCATCCTAAGTTGAACAACAAGTCTTCTAATCTGAATTTTACCGGCCATCAAAATTCTGATGAAAATTTAAATTTTTTGAAGTTTGGCCTTGAAAATGTTCCAGTGATGAGTTATGGTTATTGGGAAGGGAATGCAATACAAAGTAGACAGTCTGGTCTCTCATCCTTGCCCGATTCTTCCTTCTTGTTAGCTAAATATCCTGCTGCGTTTAGTAATTATCCTACATCATCTTCCAATTTGGAGCAACAACCACCATTGCAGGCCTTTGCCAAGAATAGTCAACGGCATTTGACTGGTGCATCTACTTTTACAGCTAGAGACGTGAATGGTAGCAATGCTATGCTTGATTATCAGATGTTTAGAGGTAGAGATGGTCCACAAGTTCAGCCATTTATGGTTGATGTCCAACACCGCCAAGATTTATTCTCTGAGATGCAGAGAAGACACAGTTTTGAAGCAATCTCCAGTTTGCAGCAGCAAGGAAGGGGAATGATGGGAATGAATAGCGTTGGAAGACCTGGGATTCTAGTGGGAGGTTCGTGCAGTGGTGTCTCTGATCCTGTGGCGGCAATTAAAATGCATTATTCCAATTCTGAGAAGTATGGTGGTCAAAATGGAAGTGTTGTTAGAGATGATGAGTCATGGGGAGGGAAAGGGGACTTAGGCAGGTAG 4968 0.4279 MPPEPLPWDRKDFFKERKHDRSEAVGSVARWRDSSHHRDFNRWGSAEFRSRPPGHGKQGGWHMFSEEPGHGYGVSRSGDKMLEEDGRPLVSRGDGKYGRSSRDNRGGPFGQRDWRGHSWEASNGSPNLSRRPQDMNNEQRSVDDSPTYSSHPHSDFVNTWEQHNLKDQHAKTGGVNGLGTGPRCDRENSLSSIDWKPLKWTRSGSLSSRGSGFSHSSSSRSMAGTDSYEGKPNLKHKNVTAVESNSGEATACVTSSMPSEDATSRKKPRLNWGEGLAKYEKKKVDVPDPGSNKDGSVSSAGNMEPCSSISPNLVDKSPKVTGFSDCASPATPSSVACSSSPGVDDKLLGKVGNADNDVSNLTDSPAPGFQNHLQKFYLNLDKLDVDSLNSLGSSIVELVQSDDPSSDDSGLVRSNAINKLLIWKADISKVLEMTESEIDLLENELKSLKSESVDRSECPVASGSQQADSSSKFYEERVEVSQKVIRPVPLKIISSDEPNTVKMPQSTNLCSIHENDKEEDIDSPGSATSKFVEPLPVNAVSSSYTRGYDNLSRDMNAVQSTMMKCFVRCNRKNTSVSACNNVNTPTEVKDSLGDVTFGANLCSSYGDTYKSIIASNKESANRAHKLFTKLVPKECKKHGNMGVSNDSFSHTSILQKFAEKKQFERFKERVIALKFKALHHLWKEDMRLLSIRKCRPKSHKKNELNVRTTCSSNMKNRSSIRSRFTFPAGNHLSLVPTTEIINFTSKLLSESQAQLQRNTLKMPALILDEKEKMVTKFISSNGLVEDPLAIEKERSMINPWTSEEKELFLEKFAAFGKDFRKIASFLDHKTTADCIEFYYKNHKSECFEKLKRKDIGKLGKSYAAKTNLMASGNKRMRGRRYLLGYGNVKASRGEDSIIERSNSFDTLGDERETAAAADVLAGICGSFSSEAMSSCITSSIDPVDGNKETKFLKANPLFKQPLTPDISQNADDETCSDESCGEATEWTDDETAAFLQAVSSFGKDFEKISRCVGTKAQEHCKRFFSKTRKCLGLNLANPVPGINGSPLNDDANGGESDTDDACVVEAGSVVDADKSGNKTDEDLPSDALNTFHDESNPLEATSLSAKLNESREISGTEVCLENVDVASVACAINVESKLGSDVSGVGLCTTDKSGSVNGVGLGGTVRESISASEIIKPRECGSVALDRTVSEGSSGGLCLGSEVERQRVSAPHCVVDKDVEHVADAGVVVELKNCVLESSTAANVSFSPVVNSCSGLSFGSENKHVSFGKPHTSALSMSMSDLQATANSLLLKAAAAQCEKTVSQDRLSSTCDIQGGRDMRCHSSGSNGDHQLPLSGSHVETVSVLQGYSMQVPIKKEVDGDVNCSSSAAEFPLLPQKVKQTDGHFKPSFHSSNSEKTSRNGDVKLFGKILTNPSSTQNPNLTAKRSEENGSHHPKLNNKSSNLNFTGHQNSDENLNFLKFGLENVPVMSYGYWEGNAIQSRQSGLSSLPDSSFLLAKYPAAFSNYPTSSSNLEQQPPLQAFAKNSQRHLTGASTFTARDVNGSNAMLDYQMFRGRDGPQVQPFMVDVQHRQDLFSEMQRRHSFEAISSLQQQGRGMMGMNSVGRPGILVGGSCSGVSDPVAAIKMHYSNSEKYGGQNGSVVRDDESWGGKGDLGR* 1656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3509 1655 SMART sant 982 1030 IPR001005 -
Mtr1g3509 1655 SMART sant 796 844 IPR001005 -
Mtr1g3509 1655 ProSiteProfiles SANT domain profile. 795 846 IPR017884 -
Mtr1g3509 1655 MobiDBLite consensus disorder prediction 1633 1655 - -
Mtr1g3509 1655 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 1628 - -
Mtr1g3509 1655 Pfam Myb-like DNA-binding domain 799 840 IPR001005 -
Mtr1g3509 1655 Pfam Myb-like DNA-binding domain 985 1026 IPR001005 -
Mtr1g3509 1655 ProSiteProfiles SANT domain profile. 981 1032 IPR017884 -
Mtr1g3509 1655 MobiDBLite consensus disorder prediction 1410 1425 - -
Mtr1g3509 1655 MobiDBLite consensus disorder prediction 238 261 - -
Mtr1g3509 1655 MobiDBLite consensus disorder prediction 8 45 - -
Mtr1g3509 1655 Coils Coil 424 451 - -
Mtr1g3509 1655 CDD SANT 985 1024 IPR001005 -
Mtr1g3509 1655 SUPERFAMILY Homeodomain-like 985 1031 IPR009057 -
Mtr1g3509 1655 MobiDBLite consensus disorder prediction 1410 1448 - -
Mtr1g3509 1655 MobiDBLite consensus disorder prediction 118 159 - -
Mtr1g3509 1655 Gene3D - 776 848 - -
Mtr1g3509 1655 MobiDBLite consensus disorder prediction 77 110 - -
Mtr1g3509 1655 MobiDBLite consensus disorder prediction 262 289 - -
Mtr1g3509 1655 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 1628 - -
Mtr1g3509 1655 MobiDBLite consensus disorder prediction 1074 1088 - -
Mtr1g3509 1655 MobiDBLite consensus disorder prediction 1385 1400 - -
Mtr1g3509 1655 MobiDBLite consensus disorder prediction 292 314 - -
Mtr1g3509 1655 MobiDBLite consensus disorder prediction 1073 1093 - -
Mtr1g3509 1655 Gene3D - 946 1037 - -
Mtr1g3509 1655 MobiDBLite consensus disorder prediction 1382 1401 - -
Mtr1g3509 1655 MobiDBLite consensus disorder prediction 1 314 - -
Mtr1g3509 1655 MobiDBLite consensus disorder prediction 194 226 - -
Mtr1g3509 1655 SUPERFAMILY Homeodomain-like 783 844 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3509 Mtr-Chr1 46650929 46659757 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr1g3509 Myb_DNA-binding 1.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3509 - - cam:101504689 2627.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3509 1 46650929 46659757 Mtr1g3509 1 46650929 46659757 ECH