Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3491 ATGTTTGTAGTTATGGATTCCATGGAAAAAACCTCTGAAAAGTGCTTAGATTCACAACTATGGCACGCATGTGCTGGCGCCATGGTTCAAATGCCACCACTCAACACAAAAGTCTTCTACTTTCCACAAGGTCATGCAGAACATGCTCATAACAAAGTTGATTTTTCCAAAACCCGTGTTCCACCTCTCATCCCTTGTAGAATCTCTGCTATGAAATACATGGCAGACCCTGAAACTGATGAAGTCTACGTCAAAATGAAACTAACTCCTTTAAGAGAAAACGAGTTAGATTTTGAAGAAGATTGTTTCTTTGGAAACAATGGCTTAGAGAGTCAAGAAAAGCCAGCTTCTTTTGCAAAGACATTAACACAATCTGATGCAAACAACGGTGGAGGTTTTTCTGTTCCTAGATACTGTGCTGAGACTATTTTTCCTAGGTTGGATTATTCAGCAGAACCACCTGTTCAGACAATTATTGCTAAGGATATGCATGGACAGTGTTGGAAGTTTAGACATATATATAGAGGAACACCAAGGAGACATCTTTTGACAACTGGTTGGAGTAATTTTGTGAATCATAAGAAGCTTGTTGCTGGTGATTCAATTGTGTTTTTGAGAGCAGAAAATGGAGATCTTTGTGTTGGTATAAGGAGAGCAAAGAAAGGTGGAATTGGTGGTGGAACTGATCAGTTTTCTAATTCTTCTAGTACTTGGAACCGTGTATCACCTTTGTTTGGTGGTGTTGGTTCTGGTTTCTTGTGTGGAAATGATAACAGAAAAAATGGTTGTGATGATTTGATGGGAAAAGTAGGAGCTGAATCTGTTGTTGAAGCTGTAAATTGTGCTGTTAATGGAAGATCTTTTGAGGTTGTGTATTATCCAAGAGCTAGTACTCCTGAATTTTGTGTTAAGGTTTCTTCAGTTAAATCTGCAATGCAAATTCAATGGTGTTCTGGTATGAGATTCAAAATGCCTTTTGAAACTGAGGATTCTTCTAGGATTAGTTGGTTTATGGGAACTATTTCTTCTGTTCATGTTCAAGATCCAATTCGTTGGCCTGATTCTCCTTGGCGCCTTCTTCAGGTAGTGTGGGATGAACCAGATTTACTTCAAAATGTGAAATGTGTAAACCCTTGGTTAGTTGAATTAGTCTCAAACATGCCAAATTTCAATCTCTCACCATTCACACCTCCAAGAAAGAAACCAAGGTTTATCCAAGATCCATATTTTCACCTCATGAATCAATCATCATCACCATCAATCTCCAACATTAATCTTCTCAATTACACAAAATCTTCTCTCTGTAACATTCAAGACACTACCACTAATAGTTCTTTTGCATCAAGCATACAGGGAGCCAGGCATGCTCAATTTGGACCAAATTATAATAATCCATCTGATTTAATTCCCTTCAACAAGCTACTACAACAAGACATGTTTCTTGGTAATTTGTCATTGTCAAGGTTTAATCAACAACAACCTATAACTAGGCCTCCTTATGGACCCTACAAGAGTATCAATAACAATAACAACACTAAGACCAATGTTGACTTGTCTTGTTTGTTGAGTGTGGGAAATTCTGGTCAAAGTTTTAAGGAATCCAATATTGAAGCAAAAGCACCCCATAACCATAACCATATTTTGTTATTTGGAAAAATCATTCACACTGAACAAAACAGTTCAAATATTTCAAAGAGTGATTCTGTTTCTGAAGGAACTTCTTTGAAAACATCAAATGCTTCTTCTTCTGATCCAGTTGAGAATTCTTCTGATGGAGGCTCTCCTTGGTATAAGGATCAACAACACAAGTCTGATCTTGTTGGAACAGAAAATGTTACTACATTGTGTATGGCTTCATAA 1860 0.3726 MFVVMDSMEKTSEKCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHNKVDFSKTRVPPLIPCRISAMKYMADPETDEVYVKMKLTPLRENELDFEEDCFFGNNGLESQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGGIGGGTDQFSNSSSTWNRVSPLFGGVGSGFLCGNDNRKNGCDDLMGKVGAESVVEAVNCAVNGRSFEVVYYPRASTPEFCVKVSSVKSAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVHVQDPIRWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPNFNLSPFTPPRKKPRFIQDPYFHLMNQSSSPSISNINLLNYTKSSLCNIQDTTTNSSFASSIQGARHAQFGPNYNNPSDLIPFNKLLQQDMFLGNLSLSRFNQQQPITRPPYGPYKSINNNNNTKTNVDLSCLLSVGNSGQSFKESNIEAKAPHNHNHILLFGKIIHTEQNSSNISKSDSVSEGTSLKTSNASSSDPVENSSDGGSPWYKDQQHKSDLVGTENVTTLCMAS* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3491 619 MobiDBLite consensus disorder prediction 561 619 - -
Mtr1g3491 619 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Mtr1g3491 619 SMART B3_2 118 220 IPR003340 GO:0003677
Mtr1g3491 619 CDD B3_DNA 117 218 IPR003340 GO:0003677
Mtr1g3491 619 Gene3D - 116 220 IPR015300 -
Mtr1g3491 619 PANTHER AUXIN RESPONSE FACTOR 16 7 613 - -
Mtr1g3491 619 Pfam Auxin response factor 278 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr1g3491 619 Gene3D - 315 389 - -
Mtr1g3491 619 SUPERFAMILY DNA-binding pseudobarrel domain 109 219 IPR015300 -
Mtr1g3491 619 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Mtr1g3491 619 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 613 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr1g3491 619 MobiDBLite consensus disorder prediction 561 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3491 Mtr-Chr1 46380253 46383290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3491 1 606 B3 DNA Binding Superfamily AT4G30080 52.989 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr1g3491 B3 5.8e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3491 - - mtr:MTR_1g094960 1262.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3491 1 46380253 46383290 Mtr1g2199 1 32267348 32271074 ECH
Mtr7g3089 7 47717148 47720090 Mtr1g3491 1 46380253 46383290 ECH
Mtr1g2199 1 32267348 32271074 Mtr1g3491 1 46380253 46383290 ECH
Mtr1g3491 1 46380253 46383290 Mtr1g3491 1 46380253 46383290 ECH