Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3490 ATGGCTGGAACAATGAACGAGATTGATTGCTTCAACTTATTTGACAACATTGATGACATTTACCCCGTCGACGATGTTGACACCGCTGCCGCCTCATTGCCTTCCTCCGCGGGAAACTACAACTCGTTGGCGAGTATCTGGCCGAATGAGTCTGACTCGGTTTTTTCCGGCAATAGTACTTCAGACCTCTCGGCGGAGCTCCCCGTTGATCCGTTCGAAGATCTTCTTTCATTGGAATGGGTGTCCAATATTGTGGACGATTCATTTTGTGAGGAGAGTCTCACAATGAAGGTGGAGCAGCAGCCATCATCATCAGCTGTCAGCAAGGAGGACTCTGGGCATTACCAATTTCAGACACCAAGTCCTATTTCTGTCCTTGAAAGCAGTAGTTCCTGCTCTGGTGGAAAGACCACAGGGATTTACGTCCCCATCCCCGTGCCTTGCGGACGTGCACGCACCAAGCGTCCACGCCCCACAGCCTTCAACCCTCGTTCTGCCATGCAACTCATTTCCCCTACTTCCTCTTCTGTTGAGGAGAACATGCAGCCTAATGTTATCTCCACCAAGGCGATGTCTTCAGATTTTGAAAATTTTGCTGAGTCCCGAATTATTGTCAAGAAACCAAAGCTCTCTTCTGGAGAAACCAAGAAGAAAAAGAAAATCAAGGCACCACTTCCTACTGCTCCTGCTGACAGTGGTGAACAGATTGGTTCACTACCTGTTAGGAAATGCATGCATTGTGAGATAACCAAGACTCCACAATGGAGGGCAGGTCCAATGGGGCCAAAAACACTCTGCAATGCTTGCGGTGTTCGGTACAAGTCTGGCCGACTTTTCCCTGAATACCGGCCTGCTGCTAGTCCAACGTTTTGTCCAGCTGTGCACTCCAATTCGCACAAAAAGGTCCTTGAAATGAGATGCAAGGATAGTTTTGAATCAGATTCGGCTGAACTCATTCCAAACACCAATGTTCTCGCCTTGGAATACAACATTTGA 996 0.4819 MAGTMNEIDCFNLFDNIDDIYPVDDVDTAAASLPSSAGNYNSLASIWPNESDSVFSGNSTSDLSAELPVDPFEDLLSLEWVSNIVDDSFCEESLTMKVEQQPSSSAVSKEDSGHYQFQTPSPISVLESSSSCSGGKTTGIYVPIPVPCGRARTKRPRPTAFNPRSAMQLISPTSSSVEENMQPNVISTKAMSSDFENFAESRIIVKKPKLSSGETKKKKKIKAPLPTAPADSGEQIGSLPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPAVHSNSHKKVLEMRCKDSFESDSAELIPNTNVLALEYNI* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3490 331 MobiDBLite consensus disorder prediction 210 234 - -
Mtr1g3490 331 PANTHER GATA TRANSCRIPTION FACTOR 4 329 - -
Mtr1g3490 331 ProSitePatterns GATA-type zinc finger domain. 244 269 IPR000679 GO:0006355|GO:0043565
Mtr1g3490 331 ProSiteProfiles GATA-type zinc finger domain profile. 238 274 IPR000679 GO:0006355|GO:0043565
Mtr1g3490 331 PIRSF Txn_fac_GATA_plant 2 328 IPR016679 GO:0003677|GO:0005634|GO:0045893
Mtr1g3490 331 PANTHER GATA TRANSCRIPTION FACTOR 8 4 329 - -
Mtr1g3490 331 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 242 301 - -
Mtr1g3490 331 SMART GATA_3 238 288 IPR000679 GO:0006355|GO:0043565
Mtr1g3490 331 Pfam GATA zinc finger 244 277 IPR000679 GO:0006355|GO:0043565
Mtr1g3490 331 Gene3D - 241 288 IPR013088 GO:0006355|GO:0008270
Mtr1g3490 331 CDD ZnF_GATA 243 300 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3490 Mtr-Chr1 46361432 46365809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3490 240 328 C2C2-Gata Transcription Factor Family AT3G54810 71.875 6.10e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mtr1g3490 GATA 5.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3490 - - gmx:100815693 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3490 1 46361432 46365809 Mtr1g3490 1 46361432 46365809 ECH