Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3485 ATGGGAAGTAAATGGAAGAAAGCAAAGGTTGCTCTTGGTCTTAATCTTTGCATGTTTGTTCCTAGAACGTTAGATGATGATTTTCCACCTTCTACTGTGGTTTCTGAGAGATTGTCTGATGCTGCTCTTCTCTCACCTGTCAACTGGGACAAGGGTTCTTCTCAACCAACCACTCCAGTGTCTTCTTTTCATGGTTTCAAACTTTCCAAAAGTAGCAGCAAATCTTCTAAGCAAACTTGCGCAATATGCTTAACCAAAATGAAGCAAGGATCCGGCCAAGCTATATTCACTGCAGAATGTTCACATTCCTTCCATTTCCATTGCATTGCTTCAAATGTGAAACATGGGAACCAAGTATGTCCAGTGTGCCGAGCAAAGTGGAAGGAAATACCTTTGTCGGGTTCCAGCTTAGCTCCTATCCAAGGTAGAGTAACACCAAGTCCAATAAATTGGCCACAAAATGATGCTTTGATGGCTGTGGTCCATCGCCTACCTCTCCCTCATCCTCGCCGAGATTTGAACAGGCGGCATATTGTGCCACTTTATCAAGCTTCTGAGCCAGGCATATTTAATGATGATGAATCCTTAAATCACCAACATGCGATTTCTGAGAGAAGTACTTGCACTAAGAGTACCGAAGATACCGATGCTGTTCAAGCAATGGAGATTAAAACGTACCCTGAAGTGTCTTCTGCTCCAAGGTCCAATACTTACTCTAACTTCACAGTTTTGGTTCATCTCAAAGCTACCGCTGCAGCTGCTTCTGCTGCCAAAAAACAAAACCTTACCAGAAATCAGGCTAGCTTTACACAGATTTCATCAACTCCACGTGCCCCGGTTGACTTGGTCACTGTGCTTGATGTCAGTGGTAGCATGGCGGGAACTAAGCTCGCACTACTAAAAAGGGCGATGGGATTTGTTATCCAGAACCTAGGCACTAATGACCGGCTTTCTGTTATTGCTTTCTCTTCCACAGCTCGCCGTCTCTTTCCACTGTGTAAGATGACTGATTCTGGGCGGCAGCAGGCATTGCAAGCTGTTAATTCTTTGGTTGCAAATGGTGGTACCAATATTGCCGAAGGGCTGAGAAAAGGTGCTAAGATAATGGAAGACCGAAAAGAAAAGAATCCAGTTGCGAGTATTATTTTACTGTCAGATGGACAGGATAATTACACTGTTGGGGGCCCTGGAAATGACCAACCTCAACCAAATTATCATTTGCTTTTGCCTACTTCCATCAGTGGTCGTGATAATTCAGGATTTCAAATTCCTGTGCATGCTTTTGGATTTGGTGCAGACCATGATGCTTCGTCAATGCACTCAATTTCAGAGATCTCCGGCGGCACGTTTTCGTTCATCGAAACTGAAGCTGTGTTGCAGGATGCATTTGCACAATGCATTGGAGGACTACTAAGTGTTGTTATTCAAGAATTGCAAGTGGCAATCGAGTGTATACAACCTGATCTCGGTCTTGTTTCACTTAAAGCAGGAAGTTACCCGAGTCGTTTGATGGCTGATAGACGCAAAGGAGTGATCGACGTTGGGGACTTGTATGCTGATGAAGAGAGGGATTTTCTAGTTTCGGTTAATGTTCCAGCTACGTCCAGCAATGAAACATCATTGATAAAGGTCAAATGTGTTTACAAAGATCCCTTGACTCAAGAGACATCAACATTGGAAAGTGATGAAGTAAAGGTTGAGAGGCCCGAAATAGCAAGGCAGGTTGTAATGTCTCTTGAAGTGGACAGACAACGCAACAGGCTCCAAGCTGCCGAGGCAATGGCACATGCACGGACCGCAGCTGAAAAGGGAGACCTCGCTGGAGCAGTATTCATTCTCGAAAACTGTCGGAAGATGCTTTCGGAGACCGTATCAGCTAAATCTCACGACCGCCTTTGTGTTGCATTGGATGCTGAACTCAAGGAAATGCAAGAGCGGATGGCGAGTAGGCATGTGTATGAAGCATCTGGGAGAGCATATATACTCTCCGGTTTGAGTTCACACTCGTGGCAAAGAGCAACTGCAAGAGGCGATTCCACCGATAGTTCAAGTCTTGTTCAAGCGTATCAGACACCATCGATGGTTGAGATGCTTACTCGATCTCAGGCCATGTTACTAGGTAGTCCATCAGGTCAGAGGCTTCTTCAGCCACTTTTGTCATACAGATCACAACCAAGCCCAAGGTAA 2187 0.4499 MGSKWKKAKVALGLNLCMFVPRTLDDDFPPSTVVSERLSDAALLSPVNWDKGSSQPTTPVSSFHGFKLSKSSSKSSKQTCAICLTKMKQGSGQAIFTAECSHSFHFHCIASNVKHGNQVCPVCRAKWKEIPLSGSSLAPIQGRVTPSPINWPQNDALMAVVHRLPLPHPRRDLNRRHIVPLYQASEPGIFNDDESLNHQHAISERSTCTKSTEDTDAVQAMEIKTYPEVSSAPRSNTYSNFTVLVHLKATAAAASAAKKQNLTRNQASFTQISSTPRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGTNDRLSVIAFSSTARRLFPLCKMTDSGRQQALQAVNSLVANGGTNIAEGLRKGAKIMEDRKEKNPVASIILLSDGQDNYTVGGPGNDQPQPNYHLLLPTSISGRDNSGFQIPVHAFGFGADHDASSMHSISEISGGTFSFIETEAVLQDAFAQCIGGLLSVVIQELQVAIECIQPDLGLVSLKAGSYPSRLMADRRKGVIDVGDLYADEERDFLVSVNVPATSSNETSLIKVKCVYKDPLTQETSTLESDEVKVERPEIARQVVMSLEVDRQRNRLQAAEAMAHARTAAEKGDLAGAVFILENCRKMLSETVSAKSHDRLCVALDAELKEMQERMASRHVYEASGRAYILSGLSSHSWQRATARGDSTDSSSLVQAYQTPSMVEMLTRSQAMLLGSPSGQRLLQPLLSYRSQPSPR* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3485 728 ProSiteProfiles VWFA domain profile. 281 467 IPR002035 -
Mtr1g3485 728 SMART ring_2 80 123 IPR001841 -
Mtr1g3485 728 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 710 - -
Mtr1g3485 728 SUPERFAMILY RING/U-box 76 130 - -
Mtr1g3485 728 CDD vWA_C3HC4_type 280 454 - -
Mtr1g3485 728 PANTHER OS10G0464500 PROTEIN 3 710 - -
Mtr1g3485 728 Gene3D von Willebrand factor, type A domain 281 468 IPR036465 -
Mtr1g3485 728 Pfam RING-like zinc finger 80 109 IPR001841 -
Mtr1g3485 728 ProSiteProfiles Zinc finger RING-type profile. 80 124 IPR001841 -
Mtr1g3485 728 CDD RING-H2 80 124 - -
Mtr1g3485 728 Pfam von Willebrand factor type A domain 281 464 IPR002035 -
Mtr1g3485 728 Coils Coil 626 646 - -
Mtr1g3485 728 SMART VWA_4 279 466 IPR002035 -
Mtr1g3485 728 SUPERFAMILY vWA-like 276 467 IPR036465 -
Mtr1g3485 728 Pfam VWA / Hh protein intein-like 630 702 IPR032838 -
Mtr1g3485 728 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 131 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3485 Mtr-Chr1 46301649 46306017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3485 69 124 C3H Transcription Factor Family AT1G57730 42.857 3.88e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3485 - - gmx:100818239 1228.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3485 1 46301649 46306017 Mtr1g3485 1 46301649 46306017 ECH