Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3484 ATGGGGTTCTTTGAAAGTTTCTTGGGTGTTTTTGGTTTTGCTATTGGAATCCCTCTTGGTCTTCTTCTTGGCTTCTTTCTCTTTGTTTATTCTGAATCAAAGCAAGTCAAGGATCCTGTTGTTAGACCAATTAGTGAATTAGGCCCGCTTGCTTTGCAAGAACTTATGCCTGAGATTCCTCTCTGGGTGAAGACACCTGATTATGAAAGAGTTGATTGGTTGAACAAGTTTTTATTTGATATGTGGCCTTTCTTGGAGAAGGCAATTTGTGGGATAATTAGGACTACAGCACAACCGATATTTGATGAATACATTGGAAAGTATCAGATCAAGGCAATTGAGTTTGATCAATTGAGCCTTGGTACTCTTCCTCCCACTATTTGTGGTATGAAAGTTTTGCAAACAAATGAAAAGGAATTGGTCATGGAACAAGTCATCAAATGGGCTGGCAACCCAAACATAGTACTGACCTTGCATGTGTTGTCTATGAAGATCAAAGTTCAGTTGGTAGACTTACAAGTTTTTGGGACGCCGCGGATAAGTTTAAGACCTTTGGTGTCTACACTTCCATGTTTTGCAAAGATTGTGGTGTCTTTGATGGAGAAGCCTCACGTGGATTTTGGGTTGGCAATATCTGGAGGGGACATCATGTCAATACCTGGTCTTTATAGATTTGTTCAGGAAACAATAAAAAAACAAGTTGCAAGCCTTTATCTTTGGCCTCAGATCTTGGAAATTCCTATACTTGATGAATCAACGGTGGCAATAAAGAAGCCAGTGGGAATATTACATGTGAATGTGGTTAGGGCAGTCAAGCTTTTGAAAATGGATTTGTTAGGAACTTCTGATCCATATGTCAAACTAAGCCTGACTGGTGACAAACTTCCGGCGAAGAAAACCACTATCAAGAGGAGGAATTTGAATCCTCAATGGAATGAGAAATTCAAGATTGTTGTGAAGGACCCTCAATCTCAAGTTCTCCAATTACAAGTCTATGATTGGGACAAGGTTGGTGCACATGACAAGCTGGGAATGCAGTTAGTCCCTCTAAAGCTGCTTAAGCCGTACGAGAATAAAGAATTTACACTTGATTTGCTTAAGGACACAAATGTCAATGAGACTCCAAATAAGAAGTTTAGAGGGAAAATTGTGGTGGACATGACTTTTGTTCCATTCAGAGAAGATAGTATGAAATTCGGTGGATCTTCAGAAGGATATGTCAGAAAGGATAGTGGAATTGATAGTGTATCTGATGATGAGGTCCAAGAAGGAGCCGGTTTGCTTTCAGTTGTGGTACAGGAGGCTGACGAAGTTGAGGGTCATCACAATAATCCCTTTGCAGTGATCACCTTTAGAGGCGAAAAGAAAAGGACAAAGATGATGAAGAAAACCCGTCAACCACGTTGGAATGAAGAATTCCAGTTTATGCTAGAGGAACCTCCTCTACATGAGAAGATACACATTGAGGTCATGAGCAAGAGGAAGAACTTCAGTTTTCTGTCAAAGGAATCCCTGGGGCATGTGGAGATTAATCTGAGTGATGTGGTGCATAATGGTCGCATTAACGACAAGTACCATCTAATAAATTCAAGGAATGGAGTAATTCATGTTGAGATAAAATGGAAGGTGGTTTAA 1635 0.4012 MGFFESFLGVFGFAIGIPLGLLLGFFLFVYSESKQVKDPVVRPISELGPLALQELMPEIPLWVKTPDYERVDWLNKFLFDMWPFLEKAICGIIRTTAQPIFDEYIGKYQIKAIEFDQLSLGTLPPTICGMKVLQTNEKELVMEQVIKWAGNPNIVLTLHVLSMKIKVQLVDLQVFGTPRISLRPLVSTLPCFAKIVVSLMEKPHVDFGLAISGGDIMSIPGLYRFVQETIKKQVASLYLWPQILEIPILDESTVAIKKPVGILHVNVVRAVKLLKMDLLGTSDPYVKLSLTGDKLPAKKTTIKRRNLNPQWNEKFKIVVKDPQSQVLQLQVYDWDKVGAHDKLGMQLVPLKLLKPYENKEFTLDLLKDTNVNETPNKKFRGKIVVDMTFVPFREDSMKFGGSSEGYVRKDSGIDSVSDDEVQEGAGLLSVVVQEADEVEGHHNNPFAVITFRGEKKRTKMMKKTRQPRWNEEFQFMLEEPPLHEKIHIEVMSKRKNFSFLSKESLGHVEINLSDVVHNGRINDKYHLINSRNGVIHVEIKWKVV* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3484 544 Gene3D C2 domain 257 404 IPR035892 -
Mtr1g3484 544 ProSiteProfiles C2 domain profile. 240 363 IPR000008 -
Mtr1g3484 544 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 247 IPR039010 -
Mtr1g3484 544 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 543 IPR045050 GO:0008289
Mtr1g3484 544 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 425 541 IPR035892 -
Mtr1g3484 544 PRINTS C2 domain signature 278 290 IPR000008 -
Mtr1g3484 544 PRINTS C2 domain signature 305 318 IPR000008 -
Mtr1g3484 544 PRINTS C2 domain signature 327 335 IPR000008 -
Mtr1g3484 544 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 258 392 IPR035892 -
Mtr1g3484 544 ProSiteProfiles C2 domain profile. 408 525 IPR000008 -
Mtr1g3484 544 PANTHER SYNAPTOTAGMIN-3 1 543 - -
Mtr1g3484 544 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Mtr1g3484 544 Gene3D C2 domain 427 544 IPR035892 -
Mtr1g3484 544 Pfam C2 domain 261 359 IPR000008 -
Mtr1g3484 544 Pfam C2 domain 427 526 IPR000008 -
Mtr1g3484 544 CDD C2 263 365 - -
Mtr1g3484 544 SMART C2_3c 427 524 IPR000008 -
Mtr1g3484 544 SMART C2_3c 262 362 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3484 Mtr-Chr1 46282209 46287415 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3484 260 344 C2H2 Transcription Factor Family AT4G05330 38.824 4.08e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3484 - - gmx:100813029 951.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3484 1 46282209 46287415 Mtr1g3484 1 46282209 46287415 ECH