Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3482 ATGGAGTTTTCAAATGGAGATAATAGCAATGGTAGTAACGGTTCTTCCATGAATCTTCGCAATGGTGGAACAAAAACTAGTAACAACAATGACCCTTTGAATTGGGGTATAGCTGCAGATTCTATGAAGGGTAGTCACCTAGATGAGGTGAAGCGTATGGTAGAGGAATACCGGAAACCGGTTGTGCCCTTAGGTGGAAAAGGTTTAACAATAGCACAAGTGGCTGCGGTTGCAACTTATAGTACCGGTGTGGCGGTTGAACTAGCGGAAGAGGCACGCTCCGGCGTTAAAGCTAGTAGTGATTGGGTGGTTGATAGTATGAATAAAGGGACTGATAGCTATGGTGTGACCACTGGGTTTGGTGCAACCTCACACAGAAGAACAAATAAAGGTAGTGCCCTTCAAAGTGAACTCATCAGATTTCTGAATGCTGGAATTTTCGGCAATGGAACAGAAGCATCTCAGACATTACCTCCCACAGCCACAAGAGCAGGCATGTTGGTTAGAATCAACACATTGCTTCAAGGATATTCAGGAATCAGATTTGAAATCATGGAAGCTATAGCAAAATTTCTGAACCATAACATAACACCATGTCTTCCATTAAGAGGTACAATCACTGCATCAGGTGATTTAATTCCTTTATCATATGTTGCTGGCCTTTTAATTGGAAGGCCAAATTCAAAATCTATTGGACCTAATGGACAAGTTCTGAATGCTCAAGAGGCTTTTCAACTAGCTGGAATTGAAACTGGTTTCTTTGAGTTGCAACCTAAAGAAGGTTTAGCACTAGTGAATGGTACTGCAGTTGGATCAGGTTTGGCTTCATTGGTTCTTTTTGATACAAATTTACTAGTTGTTCTCTCGGAAATTTTGTCTGCGATTTTCGCGGAAGTTATGCTAGGAAAACCTCAATTCACTGACCATTTAATTCATAAAGTGAAACTTCATCCTGGTCAAATTGAGGCTGCTGCTATTATGGAACATATTTTAGATGGAAGTTATTATGGTAAGGCTGCACAAAAAGTACATGAGATTAATCCACTTCAGAAGCCCAAACAAGATAGATACGCGATTCGAACATCACCGCAGTGGCTTGGACCGCAGATTGAAGTGATTCGATACGCAACAAAGATGATTGAGAGGGAGATAAATTCCGTGAATGACAATCCACTTATTGATGTTTCAAGGGATAAGGCACTTCATGGAGGAAATTTCCAAGGTACACCGATTGGTGTATCGATGGATAACACTCGTTTAGCCATTGCTGCCATTGGTAAACTTATGTTTGCTCAATTCACTGAGCTTGTGAATGACATCTATAACAACGGATTGCCTTCAAGTCTCACTGCTAGCCGCAATCCAAGTTTGGATTACGGCTTCAAAGGAGCAGAAGTTGCAATGGCATCCTATTGTTCAGAACTTCAATACCTTGCTAGTCCTGTCACCACTCATGTCCAAAGTGCTGAACAACATAACCAAGATGTTAACTCTTTAGGCTTGATCTCAGCAAGAAAAACAGCTGAAGCAGTTGAAATATGGAAGCTGATGTCATCCACTTTCTTAGTTGCATTGTGCCAAGCCATTGATCTAAGGCACATTGAGGAAAACTTCAAAAGTGTTGTCAAGAACACTGTAAGTCAAGTAGCCAAGAGAATTCTAACAGTTGGTGTCAATGGTGAGTTGCATCCATCAAGGTTTTGTGAGAAGGATTTACTCAATGTTGTTGAAGGTGAGTATGTTTTCACTTACATTGATGACCCTTGCAGTCCTATATATCCTCTAATGCAGAAGCTGAGATATGTACTAGTTGATCATGCATTGCAAAATGGTGATAAGGAGGCAAATTCAAGCACCTCGATTTTCCAAAAGATTGGAGCTTTTGAGGAAGAGCTTAAGGCCCTTTTGCCTAAAGAGGTGGAAAATGCTAGGGTTGAAATTGAAAATGGAAACCCTGCAGTTCCTAATATGATCAAGGAATGTAGATCATATCCATTGTACAAGTTCATGAGAGAAACTTTAGGGACAAGTTTGCTGACAGGTGAGAAAATTAGGTCACCTGGTGAGGACTGTGATAAGGTTTTCACAGCAATGTGTGATGGAAGGTTTATTGATCCCATGTTGGATTGTCTAAAGGAGTGGAATGGTGTTCCTCTACCTATCTGCTAG 2169 0.4085 MEFSNGDNSNGSNGSSMNLRNGGTKTSNNNDPLNWGIAADSMKGSHLDEVKRMVEEYRKPVVPLGGKGLTIAQVAAVATYSTGVAVELAEEARSGVKASSDWVVDSMNKGTDSYGVTTGFGATSHRRTNKGSALQSELIRFLNAGIFGNGTEASQTLPPTATRAGMLVRINTLLQGYSGIRFEIMEAIAKFLNHNITPCLPLRGTITASGDLIPLSYVAGLLIGRPNSKSIGPNGQVLNAQEAFQLAGIETGFFELQPKEGLALVNGTAVGSGLASLVLFDTNLLVVLSEILSAIFAEVMLGKPQFTDHLIHKVKLHPGQIEAAAIMEHILDGSYYGKAAQKVHEINPLQKPKQDRYAIRTSPQWLGPQIEVIRYATKMIEREINSVNDNPLIDVSRDKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFTELVNDIYNNGLPSSLTASRNPSLDYGFKGAEVAMASYCSELQYLASPVTTHVQSAEQHNQDVNSLGLISARKTAEAVEIWKLMSSTFLVALCQAIDLRHIEENFKSVVKNTVSQVAKRILTVGVNGELHPSRFCEKDLLNVVEGEYVFTYIDDPCSPIYPLMQKLRYVLVDHALQNGDKEANSSTSIFQKIGAFEEELKALLPKEVENARVEIENGNPAVPNMIKECRSYPLYKFMRETLGTSLLTGEKIRSPGEDCDKVFTAMCDGRFIDPMLDCLKEWNGVPLPIC* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3482 722 Gene3D Fumarase/aspartase (Central domain) 269 716 - -
Mtr1g3482 722 SUPERFAMILY L-aspartase-like 31 722 IPR008948 GO:0003824
Mtr1g3482 722 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 21 722 - -
Mtr1g3482 722 Gene3D - 22 268 IPR024083 -
Mtr1g3482 722 MobiDBLite consensus disorder prediction 1 33 - -
Mtr1g3482 722 PANTHER HISTIDINE AMMONIA-LYASE 21 722 IPR001106 -
Mtr1g3482 722 Pfam Aromatic amino acid lyase 69 540 IPR001106 -
Mtr1g3482 722 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 204 220 IPR022313 GO:0016841
Mtr1g3482 722 CDD PAL-HAL 67 532 IPR001106 -
Mtr1g3482 722 Gene3D - 535 656 IPR023144 -
Mtr1g3482 722 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 31 712 IPR005922 GO:0005737|GO:0006559|GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3482 Mtr-Chr1 46259513 46266318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3482 1 722 Monolignol Biosynthesis Gene Families AT2G37040 77.273 0.0 1182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3482 K10775 - gmx:100801470 1209.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3482 1 46259513 46266318 Mtr1g2186 1 32105170 32109769 ECH
Mtr7g3096 7 47905368 47908399 Mtr1g3482 1 46259513 46266318 ECH
Mtr1g2186 1 32105170 32109769 Mtr1g3482 1 46259513 46266318 ECH
Mtr1g3482 1 46259513 46266318 Mtr1g3482 1 46259513 46266318 ECH
Mtr7g3097 7 47916619 47920342 Mtr1g3482 1 46259513 46266318 PCT