Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3479 ATGGGTAATGTTGAAATCCCTAATTGGCTTGAGGGGTTGCCACTGGCACCTGAATTTCGACCAACTGATACTGAATTTTCTGACCCAATTGCTTATATATCAAAGATTGAGCAGAAAGCTGGTAAATTTGGGATATGTAAGATTATCCCACCATTGCCCAAGCCTTCAAAAAAATATGTTTTTTCTAATTTGAATAAGTCCCTTTTGAAGCGGCCTGAATTGGGGCCAGATGGTAGTTCTTTAGGTGCTGGTAATTCTTGGAAAATGGGTTCCGGGGATAGTGGTAATGATGGAGAGTCGCGGGCCTTGTTTACTACAAGGCAACAGGAAGTGGGACAAAATGTCAAAAAATCTAAAGGGGTAGTTCAGAAGTCAATGGCATGTGTCCATAAGCAAGTCTGGCAAAGTGGAGAGGTTTATACAATTGAACAGTTTGAGTCTAAATCGAAGACTTTTTCCAGAAGCGTTCTGGGTACGGCGAAGGATGTTTCTCCATTGGTTGTAGAGTCCATGTTTTGGAAGGCAGCTTCAGAGAAGCCTATTTATGTGGAGTATGCTAATGACGTGCCTGGTTCGGCGTTTGGAGAATCACAGGGTCAATTTTATCGTAGTCATCGAAGGCAACGGAAAAGGACTGATTATAAGAGTAGGGTAGATAGCTCTGTTTGTAAAGAAACTGAAATGGGTGGTGTAAATGATACACACAATAATGAGTCTAACGGCATTGCTTCCCCAAGTCATGCAGAATCGTGTTTAGAGACGTCTAAATCAGCTATGACTCTGTCAACATCTACACCAAATGAGGTGTCGCAGCCTTCTAAGGAGATGATTTCAGATGCTGACAATGACATGCAAGGCACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAATTTGCAAGTTATTCCTCGTGCTTCAGGCTCACTAACACGTTTCATGCCAGATGATATTCCTGGTGTTACTTCACCCATGATATACATTGGTATGTTGTTTAGTTGGTTTGCCTGGCATGTAGAGGATCATGAACTTCACAGCTTGAATTTTCTTCACACTGGCTCATCAAAGACTTGGTATTCCATTCCTGGAAATTATGCCTTTGCTTTTGAGGAAGTCATCCGCACAGAGGGTTATGGTGGTGATGTTGATCAATTAGCTGCTTTGAAACTTTTGGGCGAGAAAACTACTCTTTTATCACCTGAGGTAGTTGTTGCATCTGGGATTCCTTGTTGCAGGTTAGTACAGAATCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCACGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGGACTCCACAATGGCTTGGCATAGCTAAAGAAGCTGCAGTGCGTAGAGCTACAATGAATCATCTTCCTATGCTCTCCCATCAGCAACTGCTTTACTTGCTGACCATGTCTTTTATTTCAAGCGTGCCCAGAACACTATTACCTGGTGTGCGCAGTTCTCGTCTGAGAGACCGTCAGAAAGAAGAAAGAGAGATTCTAGTAAAACAGGCTTTTATAGAAGATATGCTGCACGAAAACAAGCTGCTATCCATTCTTCTTGGAAAAGAAGCTACTAAAGAAGTTGTTTTATGGAATGTTGATTTACTACCAGATTCTGGCAAATATCGCCAGTTGCCTGATTTAGCTTCTACTTCTGGAACCTATATGGCGGACATGTCAAATGATAATATTAGTTCTGCTGATAAGAGTAGCCATTGTCTGCTTGATGAGATGAGTTTGTACATGGAGAATCTGACCGATTCAGATGTTGGCTATGATGATCTTCCATGTCACTTCCAAACTGATTCAGGAGCATTGGTTTGTGTGGGTTGTGGAATACTTGGTTTTCCGTTTATGACATTAATACAACCAACTGAAAAATTGATAATGGAACTTCCTGATAATCATCTAGTTGAAGATTCCTCTCTGAACTCTGTTGGCTCCTTTCATAGTGCAGTCTCAAGGGATCTTTCTGTTTCTGAACTTGCCTGTGCAAAGTATTCGCCGGATCAGTCATTGAACGAGTGCAATAAATGTTGGAACACCTCCAGTACATTTTTGAAGCCGCGGATTTTCTGCTTGGAGCATGCTGTTCAGGTTGTGGAGATGTTGCAGAGCAAAGGTGGAGCCAATGTGCTTATAATTTGCCATTCAGACTATCCGAAAATAAAGGCACATGCCAGGGCAGTTGCAGAAGAGATACAGGGTGATTTTGATTATAACGAGGTTCCAATGGATATTGCATCCCCAGAAAATTTGGCTCTGATAGATCTGGCAATTGATGGTAAAGAACTTGATGAATGTGAAGATTGGACATCTAAACTAGGTCTTAATCTGCGATTTTGTGTCAATAATATAAACAAATCTCCATGTAAACAAGTTCCTTTTACACTAGCATTAGGGATGCAGTTCTATGATAAACGTCCTGGTTTATCTTTAAATTGGCATTCACAGAAAGCTCGATCTAAAAGGTCAAATCGTTTAGCTCAGTCTAAACCTGACGACATTCAGAGAAAGAAGGATGATCAATTGCAGGAAAGAATTGATGGCTCCACTGCTGAAAAGAAACTACTTCAGTATTCAAGGAGAAAATTCAAGCCAAAGCAAAGTTGTTTCTCTGTAGCAATCACGGTCTGTGAATGTGAATCCCATGAAAAATCCAAAAATGTGTCCGCTGTTTTGAGTGCGGAGCATTATAAATGTGTTTCTAAAGATGAGCTTGACACAGATAATTTCAGGAGCGATTGTGCATTGTCTCGTGGCTCTGCTTCTGCTGCAATGTCTCCATTGCATAATGAAATCCAGAATGCTGAAGCTCCCACTAGTATGAGCTTGAATACTAGTGTCTCGGAAAAATGCAGCAAAGAGAACCAGAATTGTCAGAACAATAAATATTCTGGCTCACTTTCAAATGGAATTGACAAAAATGTTGATGTGTTTGGAAACAACCAAATTACAGAAGCAATTGCCATTGGTAGCAAGTGTGATAGCTTAGATTTAGTTGGTGAAGGGTATCAAGAACAGCAGTCTGCATGCAAAAGCAACAGTGAAGCTGTTTTATCTACTGCTTCATTGGTAAACCAAACTGCTCTCGCTACTGTGGATGGAAGTTTTGAAAGTCCAATTAATAACCAGGCCGAAGAAAGGGTTAGCAATTCTATGTCATTGAAAGAGACAATTGAGCGAGAAAGTAAGTCTTTGAATGAAATGGACAAGGAACCTCTAAATGATGATAAAGAAATAAGTGAACATGCTCCTACTGCAGACATTTGTGAAGTTCCAAGAGAGCTTTATGCTTCTGCAAACTTCCATAATACAGTAGACTTGGATGCAATGCAGCAAGAACGACAAGTTGGAGAAAGTGGCGAACAGGAGATAATTCAGTCCACTCATATTTCCGCAAAACAATTGTATGAATCTACAAGTGGGGAATATGCAGAGGGATTGCACAATGAAGTGATTTTGGAGTCTTCAAAGCAGTGTCAGATCCAAAATGAGAATATAACTATTGAGGAACATGTATCTAATTATGTTGCAAAAGGTGACAATAGAAGTATAACCATATCAGAAATAAGTTGTTCTGATGTTTCAGCAGAAACCTGTCCCGAAAAAGACTCATGTATTCAATTTGTTTCGAATACTGAAAAGGAAATGGAAATCCAACCCATTCATAGAGTTGATGAGGAACTCTCTATATCAATCCAGGAATGTTCTCAAACCGAGAAAAAGACGTGTGGCAGAGAAAATGTAAATGGAAGTGAAGTTGATTTGTCACAAGATGATGGGGAGCTGGAAAGCTGTGAGTTGACTACAGAAGTTCCCAGATCAAATGCTGGGAAGAAAAAAAGGAGGAAAATGGAAGACACGGAAAATAACCAATTTGATTGCTATGACTTTATAAGAAGTCCGTGTGAAAGGCTGAGGCCAAGAACTGGGAAGACTGCCACAGGCAAAAGTGTAGGAGACAACAGCCAAAATGACGAGGAAAATCGAGTAGCTAAAAGGACACGGAAACCTGCCGAAGCTTCAATTCCTCGCAAGGATAAAAAATCCAATGTTAAAAGGCCGCATAAGTGCGACCTTGATAATTGCCGTATGAGTTTCACCACCAAGGCAGAGTTACAGTTGCACAAACGTAACCTTTGCCCACATGAAGGGTGCGGTAAGAAATTCAGTTCCCACAAATACGCATTGATTCACCAGCGCGTTCATGAGGATGATAGGCCTTTTAAATGCACATGGAAAGGTTGTTCCATGTCATTCAAGTGGTCATGGGCAAGGACAGAGCATCTAAGGGTGCATACTGGGGAGAAGCCTTATCAATGTAAGGTTGAGGGTTGCGGTCTTTCTTTCAGGTTCATATCAGATTTTAGCAGGCACAGGCGGAAAACAGGACACTGTGTGAAATCTCCTGCTTGA 4446 0.4103 MGNVEIPNWLEGLPLAPEFRPTDTEFSDPIAYISKIEQKAGKFGICKIIPPLPKPSKKYVFSNLNKSLLKRPELGPDGSSLGAGNSWKMGSGDSGNDGESRALFTTRQQEVGQNVKKSKGVVQKSMACVHKQVWQSGEVYTIEQFESKSKTFSRSVLGTAKDVSPLVVESMFWKAASEKPIYVEYANDVPGSAFGESQGQFYRSHRRQRKRTDYKSRVDSSVCKETEMGGVNDTHNNESNGIASPSHAESCLETSKSAMTLSTSTPNEVSQPSKEMISDADNDMQGTAGWKLSNSPWNLQVIPRASGSLTRFMPDDIPGVTSPMIYIGMLFSWFAWHVEDHELHSLNFLHTGSSKTWYSIPGNYAFAFEEVIRTEGYGGDVDQLAALKLLGEKTTLLSPEVVVASGIPCCRLVQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLGIAKEAAVRRATMNHLPMLSHQQLLYLLTMSFISSVPRTLLPGVRSSRLRDRQKEEREILVKQAFIEDMLHENKLLSILLGKEATKEVVLWNVDLLPDSGKYRQLPDLASTSGTYMADMSNDNISSADKSSHCLLDEMSLYMENLTDSDVGYDDLPCHFQTDSGALVCVGCGILGFPFMTLIQPTEKLIMELPDNHLVEDSSLNSVGSFHSAVSRDLSVSELACAKYSPDQSLNECNKCWNTSSTFLKPRIFCLEHAVQVVEMLQSKGGANVLIICHSDYPKIKAHARAVAEEIQGDFDYNEVPMDIASPENLALIDLAIDGKELDECEDWTSKLGLNLRFCVNNINKSPCKQVPFTLALGMQFYDKRPGLSLNWHSQKARSKRSNRLAQSKPDDIQRKKDDQLQERIDGSTAEKKLLQYSRRKFKPKQSCFSVAITVCECESHEKSKNVSAVLSAEHYKCVSKDELDTDNFRSDCALSRGSASAAMSPLHNEIQNAEAPTSMSLNTSVSEKCSKENQNCQNNKYSGSLSNGIDKNVDVFGNNQITEAIAIGSKCDSLDLVGEGYQEQQSACKSNSEAVLSTASLVNQTALATVDGSFESPINNQAEERVSNSMSLKETIERESKSLNEMDKEPLNDDKEISEHAPTADICEVPRELYASANFHNTVDLDAMQQERQVGESGEQEIIQSTHISAKQLYESTSGEYAEGLHNEVILESSKQCQIQNENITIEEHVSNYVAKGDNRSITISEISCSDVSAETCPEKDSCIQFVSNTEKEMEIQPIHRVDEELSISIQECSQTEKKTCGRENVNGSEVDLSQDDGELESCELTTEVPRSNAGKKKRRKMEDTENNQFDCYDFIRSPCERLRPRTGKTATGKSVGDNSQNDEENRVAKRTRKPAEASIPRKDKKSNVKRPHKCDLDNCRMSFTTKAELQLHKRNLCPHEGCGKKFSSHKYALIHQRVHEDDRPFKCTWKGCSMSFKWSWARTEHLRVHTGEKPYQCKVEGCGLSFRFISDFSRHRRKTGHCVKSPA* 1482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3479 1481 MobiDBLite consensus disorder prediction 84 100 - -
Mtr1g3479 1481 MobiDBLite consensus disorder prediction 72 100 - -
Mtr1g3479 1481 ProSitePatterns Zinc finger C2H2 type domain signature. 1391 1413 IPR013087 -
Mtr1g3479 1481 Pfam jmjN domain 17 50 IPR003349 -
Mtr1g3479 1481 Gene3D Classic Zinc Finger 1339 1389 - -
Mtr1g3479 1481 Gene3D Classic Zinc Finger 1390 1420 - -
Mtr1g3479 1481 Pfam JmjC domain, hydroxylase 325 443 IPR003347 -
Mtr1g3479 1481 MobiDBLite consensus disorder prediction 826 857 - -
Mtr1g3479 1481 SUPERFAMILY beta-beta-alpha zinc fingers 1437 1471 IPR036236 -
Mtr1g3479 1481 SMART JmjN_1 15 55 IPR003349 -
Mtr1g3479 1481 ProSiteProfiles Zinc finger C2H2 type domain profile. 1419 1448 IPR013087 -
Mtr1g3479 1481 SMART c2h2final6 1449 1475 IPR013087 -
Mtr1g3479 1481 SMART c2h2final6 1366 1388 IPR013087 -
Mtr1g3479 1481 SMART c2h2final6 1419 1443 IPR013087 -
Mtr1g3479 1481 SMART c2h2final6 1389 1413 IPR013087 -
Mtr1g3479 1481 ProSiteProfiles Zinc finger C2H2 type domain profile. 1449 1480 IPR013087 -
Mtr1g3479 1481 SUPERFAMILY beta-beta-alpha zinc fingers 1407 1447 IPR036236 -
Mtr1g3479 1481 ProSitePatterns Zinc finger C2H2 type domain signature. 1451 1475 IPR013087 -
Mtr1g3479 1481 MobiDBLite consensus disorder prediction 1317 1364 - -
Mtr1g3479 1481 ProSiteProfiles Zinc finger C2H2 type domain profile. 1389 1418 IPR013087 -
Mtr1g3479 1481 MobiDBLite consensus disorder prediction 201 249 - -
Mtr1g3479 1481 Gene3D Classic Zinc Finger 1421 1444 - -
Mtr1g3479 1481 MobiDBLite consensus disorder prediction 230 249 - -
Mtr1g3479 1481 MobiDBLite consensus disorder prediction 836 857 - -
Mtr1g3479 1481 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Mtr1g3479 1481 Gene3D Classic Zinc Finger 1445 1475 - -
Mtr1g3479 1481 SMART cupin_9 291 460 IPR003347 -
Mtr1g3479 1481 Gene3D Cupin 9 464 - -
Mtr1g3479 1481 MobiDBLite consensus disorder prediction 1333 1364 - -
Mtr1g3479 1481 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 1 1470 - -
Mtr1g3479 1481 SUPERFAMILY Clavaminate synthase-like 292 456 - -
Mtr1g3479 1481 ProSitePatterns Zinc finger C2H2 type domain signature. 1421 1443 IPR013087 -
Mtr1g3479 1481 Coils Coil 1052 1072 - -
Mtr1g3479 1481 ProSiteProfiles JmjC domain profile. 291 460 IPR003347 -
Mtr1g3479 1481 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 1470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3479 Mtr-Chr1 46230448 46239616 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3479 1 919 C2H2 Transcription Factor Family AT5G04240 51.757 0.0 917
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g3479 JmjC 8.6e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3479 - - gmx:100819845 2068.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3479 1 46230448 46239616 Mtr1g3479 1 46230448 46239616 ECH