Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3475 ATGTGTAGTAGTTGGAGATGTCTTGTTTGGTTGGTTTTGACATTGAGCATGTTGTTGTTTGGGGAGAAGATGCATTGTCAAGAAATGAATGACTATGACCAACTTGATAACCCTGCTGTACTTCCCCTTATTACTCAGCTTGTTTATACCAGAATTTCCAATTTGACTTCAATTCTCAGCCAACAAATTAGTAAAGACTCCAATTTTTGTGTCAAAGATCCGGATTCTGATTGGAATCAGGCCTTTAATTTTTCATCAGATTTGCGCTTCTTGTCATCTTGCATTAAAAAGACGAAAGGAGATATTTCAAACCGCTTGTGTACAGCCGCAGAAGTCAAGTTTTACTTAAATAGTTTAATGGAGAAATCTTCAAGTGCCAATTATTTAAAGCCTAACAGGAACTGTAATTTAACCTCATGGGTTTCTGGTTGTGAGCCCGGATGGGCCTGTAGTGTTCCCTCAGGCCAGAAGATTGACCTTAAAGATTCAAAGGAGATGCCTGCTAGAACTTCAAACTGTCGAGCATGTTGTGAAGGCTTCTTTTGTCCTCATGGCATCACATGCATGATACCATGCCCTCTAGGCTCATATTGCCCCATTGCTACACTCAATAAAACAACTGGCGTATGTGAACCATATCTTTATCAACTACCTCCAATGCAGCCAAATCATACATGCGGAGGAGCAAATGTTTGGGCTGATTTTAGTAGCAGTAGTGAAACATTTTGCTCAGCTGGATCTTATTGTCCAACAACCACCACAAAATTTCCGTGCAGTAGTGGGCATTACTGCAGGACGGGTTCCACATCTGCGAAAAGATGTTTTAAGCTGAGTTCATGTAATTCTAACACAGCAACCCAAAACATGCATGCATATGGAGTTATGCTCATTGCTGCTTTGAGTACTTTGCTACTCATTATTTACAACTGTTCTGACCAAGTTCTAACTACTAGGGAAAGGAGAGTGGCAAAATCAAGAGAATCAGCAGCTAGAAGTGCAAGGAAAACTGCAAATGCACACCAAAGATGGAAAGTTGCAAAAGATGCTGCTAAAAAAGGTGCAACTGGGCTGCAAGCTCAATTATCACGCAAGTTCTCTCGTAAAAAGGACGAAGAAAATCTTGAAAAAGTTAAAATTTTGAATCAAGAGACTTCTGAAACAGATGTTGAATTGTTGCCGCATTCACAACCTTCAAACATGGTTGCAAGTTCCTCTGCAGTGCCAACTGAAAAGGGAAAAACTCCAAGTGGACTAATGCACATGATGCATGAAATTGAAAATGACCCGCATGTTAACTATAATCCAAACACAGGAAAAGAAACTAGACATAAAAGTGCTACAAAGGAAAAACAGCCACAAACTAACACACAAATTTTTAAGTATGCATATGCTCAGCTTGAAAAAGAAAAGGCTCAGCAACAAGAAAACAAGAACCTTACCTTCTCAGGAGTACTAAAAATGGCTACAAATACTGAGAAAAGTAAGAGGCCTTTTATTGAGATTTCTTTCAGAGATCTGACTCTTACACTGAAAGCTCAAAACAAACATATATTGAGAAATGTAACCGGGAAAATCAAACCTGGCCGTATCACCGCTATCATGGGCCCGTCAGGGGCTGGCAAGACAACATTTCTTTCAGCTCTAGCTGGAAAAGCACTTGGATGCTTGGTTACTGGTTCAATTCTGATAAATGGAAGGAATGAATCAATTCATTCCTTTAAGAAAATTATTGGCTTCGTGCCACAAGATGATGTAGTTCATGGAAACTTGACTGTGGAAGAGAATCTCTGGTTCAGTGCACAGTGCAGGCTATCAGCTGATTTGTCAAAACCAGAAAAAGTTCTGGTTGTTGAAAGAGTTATTGAATTCTTGGGGCTTCAATCTGTGAGGAATTCCGTGGTTGGAACCGTGGAAAAGCGAGGGGTCTCTGGAGGCCAAAGGAAGCGGGTAAATGTTGGATTAGAAATGGTTATGGAACCTTCACTTTTGATGTTAGATGAACCAACATCTGGCCTGGACAGTGCATCATCTCAGCTCCTTCTAAGAGCACTAAGACGTGAAGCGCTTGAGGGAGTGAACATTTGCATGGTGGTTCATCAACCAAGCTATGCTTTGTTCAACATGTTTGATGACTTGATACTTCTGGGTAAAGGCGGTCTCATGGTCTATCACGGATCTGCCAAGAAAGTTGAAGAATATTTTTCAGGTCTCGGGATCAATGTTCCGGAGAGGATCAACCCTCCAGATTACTATATTGACATTTTGGAGGGCATTGCAGCACCTGGTGGAAGCTCAGGACTCAGTTATCAAGACCTTCCAGTTAAATGGATGCTTCACAATGAATATCCAATACCTCTTGATATGAGACAGCATGCAGCACAGTTTGGTATACCGCAGAGTGTAAATTCAGCTAATGACTTGGGGGAAGTGGGAAAGACGTTCGCCGGAGAATTATGGAATGACGTAAGAAGCAATGTGGAACTGCGAGGCGAAAAGATAAGACTTAATTTTTTAAAATCCAAGGATTTATCCAACCGGAAAACTCCTGGTGTATTCAAGCAATATAAGTACTTTCTTATACGGGTTGGGAAGCAGCGATTACGAGAAGCCAGGATCCAGGCCGTAGATTATCTTATTTTGCTACTTGCTGGAGCATGCTTAGGATCAATTACCAAATCGAGTGATCAAACATTTGGTGCATCTGGTTACACCTATACGGTGATTGCTGTATCTCTTCTATGCAAAATAGCGGCCTTGAGATCATTTTCTCTGGATAAACTGCACTACTGGAGGGAGAGTGATTCTGGCATGAGCAGCTTAGCTTATTTTCTCTCGAAAGACACGATGGATCATTTTAATACAGTGATCAAACCAGTGGTGTATCTATCTATGTTCTATTTCTTAACCAATCCAAGATCTACTTTCACAGATAACTATATTGTGCTGCTTTGTCTTGTATACTGTGTAACTGGCATAGCATATGCATTATCCATAGTTTTTGAACCTGGCGCAGCGCAGCTGTGGTCAGTACTTCTTCCAGTTGTTTCGACTCTCATTGCAACACAACAAAAAGATAGTAAAATTTTAAAGGCTATAGCTAATTTATGCTACTCTAAGTGGGCTTTACAAGCATTGGTCATTGCAAATGCTGAAAGGTACCAAGGAGTGTGGCTCATAACTCGTTGCGGTTCACTTTTAAAAAGTGGCTATAATCTTCATGATTGGAGTCTCTGCATATCCATCCTCATTCTTATGGGTGTTATTGGTCGTGCAATAGCGTTTTTCTGTATGGTCACCTTCAAAAAGAAGTAA 3312 0.4064 MCSSWRCLVWLVLTLSMLLFGEKMHCQEMNDYDQLDNPAVLPLITQLVYTRISNLTSILSQQISKDSNFCVKDPDSDWNQAFNFSSDLRFLSSCIKKTKGDISNRLCTAAEVKFYLNSLMEKSSSANYLKPNRNCNLTSWVSGCEPGWACSVPSGQKIDLKDSKEMPARTSNCRACCEGFFCPHGITCMIPCPLGSYCPIATLNKTTGVCEPYLYQLPPMQPNHTCGGANVWADFSSSSETFCSAGSYCPTTTTKFPCSSGHYCRTGSTSAKRCFKLSSCNSNTATQNMHAYGVMLIAALSTLLLIIYNCSDQVLTTRERRVAKSRESAARSARKTANAHQRWKVAKDAAKKGATGLQAQLSRKFSRKKDEENLEKVKILNQETSETDVELLPHSQPSNMVASSSAVPTEKGKTPSGLMHMMHEIENDPHVNYNPNTGKETRHKSATKEKQPQTNTQIFKYAYAQLEKEKAQQQENKNLTFSGVLKMATNTEKSKRPFIEISFRDLTLTLKAQNKHILRNVTGKIKPGRITAIMGPSGAGKTTFLSALAGKALGCLVTGSILINGRNESIHSFKKIIGFVPQDDVVHGNLTVEENLWFSAQCRLSADLSKPEKVLVVERVIEFLGLQSVRNSVVGTVEKRGVSGGQRKRVNVGLEMVMEPSLLMLDEPTSGLDSASSQLLLRALRREALEGVNICMVVHQPSYALFNMFDDLILLGKGGLMVYHGSAKKVEEYFSGLGINVPERINPPDYYIDILEGIAAPGGSSGLSYQDLPVKWMLHNEYPIPLDMRQHAAQFGIPQSVNSANDLGEVGKTFAGELWNDVRSNVELRGEKIRLNFLKSKDLSNRKTPGVFKQYKYFLIRVGKQRLREARIQAVDYLILLLAGACLGSITKSSDQTFGASGYTYTVIAVSLLCKIAALRSFSLDKLHYWRESDSGMSSLAYFLSKDTMDHFNTVIKPVVYLSMFYFLTNPRSTFTDNYIVLLCLVYCVTGIAYALSIVFEPGAAQLWSVLLPVVSTLIATQQKDSKILKAIANLCYSKWALQALVIANAERYQGVWLITRCGSLLKSGYNLHDWSLCISILILMGVIGRAIAFFCMVTFKKK* 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3475 1103 ProSitePatterns ABC transporters family signature. 642 656 IPR017871 GO:0005524
Mtr1g3475 1103 CDD ABCG_EPDR 499 725 - -
Mtr1g3475 1103 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 501 734 IPR027417 -
Mtr1g3475 1103 SMART AAA_5 527 719 IPR003593 -
Mtr1g3475 1103 Pfam ABC-2 type transporter 699 1103 IPR043926 GO:0140359
Mtr1g3475 1103 PANTHER ABC TRANSPORTER G FAMILY MEMBER 24 34 1100 - -
Mtr1g3475 1103 MobiDBLite consensus disorder prediction 428 452 - -
Mtr1g3475 1103 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 34 1100 - -
Mtr1g3475 1103 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 501 742 IPR003439 GO:0005524
Mtr1g3475 1103 Pfam ABC transporter 518 670 IPR003439 GO:0005524
Mtr1g3475 1103 Gene3D - 499 736 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3475 Mtr-Chr1 46200107 46206807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3475 517 720 Calmodulin-binding Proteins AT2G36910 26.786 2.51e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3475 - - lang:109341040 1861.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3475 1 46200107 46206807 Mtr1g2180 1 32003956 32013375 ECH
Mtr7g3103 7 47984691 47990871 Mtr1g3475 1 46200107 46206807 ECH
Mtr1g2180 1 32003956 32013375 Mtr1g3475 1 46200107 46206807 ECH
Mtr1g3475 1 46200107 46206807 Mtr1g3475 1 46200107 46206807 ECH