Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3456 ATGGCGGCTGCTTCTTCATCTACATCATTCTTTGGAATCAGAGAAGAAAATCAAAGTCAAATAACACATCATCATCCTCATCCTCAATCAACTACTACTTCTGCTACTTCCTCAGCTCCTTCAACCACAGTTCCTCAAAAGAAAAGAAGGAATCAACCTGGAACACCAAATCCAGATGCAGAAGTGATAGCACTATCTCCCAAGACTCTAATGGCAACAAATAGATTTATATGTGAGGTTTGCAATAAAGGGTTTCAAAGGGAGCAAAATCTTCAACTTCATAGAAGAGGACACAATCTTCCTTGGAAGCTAAAGCAAAAGTCCAACAAAGAGCCAAGGAGAAAGGTTTATTTGTGTCCTGAGCCCACATGCGTCCATCACGACCCTTCAAGAGCTTTAGGAGATCTAACTGGAATTAAAAAGCATTTCTCTCGTAAGCACGGTGAGAAGAAGTGGAAATGTGAAAAATGCTCAAAGAAATATGCTGTTCAATCTGACTGGAAAGCACATTCTAAGACTTGTGGTACTAGAGAATATAGATGTGATTGTGGCACCCTCTTCTCTAGGCGTGACAGTTTCATCACTCATAGGGCATTTTGTGATGCACTAGCACAAGAGAGTGTATTAAGACACCATAACCCTTTTGGGAGTACTCATCAATTGTATGCCACAAACCATCACATTAGTTTAGGCCAAATATCCCATCAATTGCAAAATCATCAGAACCAAATTACATCATCCACTAGCAACAATAACAACCTTTTGCGCCTTGGATCAGCACCACCAAAATTTGAACAAAACTTAATCTCATCACCACCTTTAAATCACTCTTCATCATTTGGACACTCAATCCCATCTTCATCACCATTCTTCAATATGAGTGATATTTCAAATCAATCCTTTGAAGAACAACAATCTCAACAAGGACAATTCTTAAACAAACAACTACATGGTCTAATGCATCTTCCTGATCTTCAAGGCAATACAAATACAAACAATTCAAATTCTTCCAATCTTTTCAACCTTATGGTTCATGATCAATTCAACAACATGAGTAGTACCCAAGGAACAACACTTTACATTAACAACAATAGCTCTTTAAGTGATCATCAAGTTGGTTTTGTCAATTCAATGCAACATGGTCAAAACATGTCTAGTCCTCACATGTCTGCCACTGCATTGCTTCAAAAAGCTTCTCAGATTGGTTCAACTAATTCTACCAACAATAACAAAGGTAGTAATAATGATCATAAATCAGGTGATAGGGACTTTGTTGTGTCTGATCACAACAACATCAATGCCACTTTTGGAAATAGAAGTTCAAGTATTGAAAATGATCATGACAACAACGATCTTCATGGATTGATAAACTCTATTGCAAATGGAAACACATCATCCATATTTGGCAATGAAAGCAATCTTAATATGAGATTTGGTGGATCTGATAAGTTAACTTTAGATTTTCTTGGTGTTGGAGGAATGGTCAGAAATATGAGTGGTGGATTTTCACAAAGTGAACAACAACGTGACATGATGAATACTAGTATGGTTTCTTTGAATCATGACCTAAAATCAGCACATTCAAGTCAACATTTTGGAAGCTCAAATATCTTGCAATGA 1620 0.371 MAAASSSTSFFGIREENQSQITHHHPHPQSTTTSATSSAPSTTVPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPRRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESVLRHHNPFGSTHQLYATNHHISLGQISHQLQNHQNQITSSTSNNNNLLRLGSAPPKFEQNLISSPPLNHSSSFGHSIPSSSPFFNMSDISNQSFEEQQSQQGQFLNKQLHGLMHLPDLQGNTNTNNSNSSNLFNLMVHDQFNNMSSTQGTTLYINNNSSLSDHQVGFVNSMQHGQNMSSPHMSATALLQKASQIGSTNSTNNNKGSNNDHKSGDRDFVVSDHNNINATFGNRSSSIENDHDNNDLHGLINSIANGNTSSIFGNESNLNMRFGGSDKLTLDFLGVGGMVRNMSGGFSQSEQQRDMMNTSMVSLNHDLKSAHSSQHFGSSNILQ* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3456 539 Gene3D Classic Zinc Finger 130 209 - -
Mtr1g3456 539 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Mtr1g3456 539 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 507 - -
Mtr1g3456 539 MobiDBLite consensus disorder prediction 402 423 - -
Mtr1g3456 539 Pfam Zinc-finger double-stranded RNA-binding 76 98 IPR022755 -
Mtr1g3456 539 Gene3D Classic Zinc Finger 55 123 - -
Mtr1g3456 539 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 507 - -
Mtr1g3456 539 SMART c2h2final6 76 98 IPR013087 -
Mtr1g3456 539 SMART c2h2final6 117 147 IPR013087 -
Mtr1g3456 539 SMART c2h2final6 152 172 IPR013087 -
Mtr1g3456 539 MobiDBLite consensus disorder prediction 1 53 - -
Mtr1g3456 539 SUPERFAMILY beta-beta-alpha zinc fingers 75 172 IPR036236 -
Mtr1g3456 539 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Mtr1g3456 539 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3456 Mtr-Chr1 45933099 45937289 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3456 10 216 IDZ Gene Family AT2G02070 74.091 8.21e-114 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g3456 zf-C2H2_jaz 3.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3456 K25870 - gmx:100806198 558.525