Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3454 ATGGCTAGGATCAAACCTCAGGCTCTGTTACAACAAAGTAAAAGGAAGAAGGGACCTTCTCGGATTAGCGCGGCCAGTATTATATTTTACGCTTTGATTCTTGTCTTGGTTGGTTTTTTCCTTTTGGCCACATACAGACATTGGTCTAACAGGTCAAGATTGCAATCAGAAAATAACTTGTCAGTCTCTGAGGAGGTTGAAAATAGTTTTGGGGACTCGAAGAAATCTGAGCTACCTGGATATGCTGTCTTAAATACATCTAAAGGGTCTATAATAGTAGAACTGTACAAGGAAAGTGCTCCTGAAGCTGTTGACGAATTTATTGACTTATGTCAAAAAGGGCACTTCAAAGGGATGCTTTTTCAGCGCGTGATTAAGCATTATGTGATTCAGGCAGGGGATGGTCAAGGAACAGGAGCAGCTGATTGGAACTTAAGAGGAAAGCAACCTGCAAGTATGAAACATGAAGCATTCATGCTTGGAACATCCAAGGGAAAACACACCAACAAAGGATTTGATCTTTTCATCACAACTGCACCGATTCCAGATCTAAATGAGAAGCTTATCGTGTTTGGGCAAGTCGTCAAGGGAGAGGATGTTGTTCAGGAAATCGAAGAAGTGGATACAGATGAACATTACACTCCTAAAATAACTATTGGGATACTTGATGTGACTCTCAAACAAAAGGTCTGA 693 0.4084 MARIKPQALLQQSKRKKGPSRISAASIIFYALILVLVGFFLLATYRHWSNRSRLQSENNLSVSEEVENSFGDSKKSELPGYAVLNTSKGSIIVELYKESAPEAVDEFIDLCQKGHFKGMLFQRVIKHYVIQAGDGQGTGAADWNLRGKQPASMKHEAFMLGTSKGKHTNKGFDLFITTAPIPDLNEKLIVFGQVVKGEDVVQEIEEVDTDEHYTPKITIGILDVTLKQKV* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3454 230 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 83 224 IPR002130 GO:0000413|GO:0003755
Mtr1g3454 230 SUPERFAMILY Cyclophilin-like 80 226 IPR029000 -
Mtr1g3454 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 95 110 IPR002130 GO:0000413|GO:0003755
Mtr1g3454 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 133 IPR002130 GO:0000413|GO:0003755
Mtr1g3454 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 185 IPR002130 GO:0000413|GO:0003755
Mtr1g3454 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 186 201 IPR002130 GO:0000413|GO:0003755
Mtr1g3454 230 CDD cyclophilin 83 223 - -
Mtr1g3454 230 Gene3D - 67 230 IPR029000 -
Mtr1g3454 230 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 1 230 - -
Mtr1g3454 230 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 78 226 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3454 Mtr-Chr1 45896310 45901362 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3454 80 226 U-box Gene Family AT5G67530 33.766 3.36e-19 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3454 - - gmx:100781538 387.497