Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3438 ATGTCATCGGAGGGAAGAAATGAGGCCATTGATGGGTCCTTGGAATATGAAGATGATGAAATAATAGATTCTCTGACCACTGTACCAGAGCCACAACATGGACCTTTACCTCAAGCCAATCACATTGATGATGGTGTTCTTTATGAAGGAAAGGTATTTAACAGTGATGATGAGGCTTACAATTTTTACTGTTTGTTTGCGCGAAAAAATGGTTTTTCAATTAGACGTCATCATGTTTACAAATCTATTAAGAATCAGTCGGATGATAATCCATTAGGTGTTTATAAAAGAGAGTTTGTTTGTCATCGTGCTGGTACTATTAGCGTAGACAAAGATAATGAAGTGGAAGGTAAAAGGAAACGGAAGTCGTCAAGATGTAATTGTGGTGCTAAATTGTTGGTGAATATAACAACAATTAACTCTGAGAAAAAATGGGTGGTGAAATATTTTAATAATAATCATAACCATGAGTTATTAGATGATAAAGAGGTTAAATTTCTTCCTGCTTATCGAAGTATTCCAACTATTGATCAAGATCGTATTCTTTTGTTGTCAAAAGCTGGTTGTTCTGTTAGTTTGATAATTAGAGTGCTTGAGTTAGAGAAAAACATAGATGCCGGAAATCTTCCATTTTTGGATAAAGACATTAGAAATTTCATTCAATCTCAAAGTGGTATTGGTAAAGAATTTGATGCTTCAAATGTTCTCAAATTATGTAAAAGTCTTAAAGATGCAGATAATGCATTTGAGTATGAATTTTCAATCGATGAAAATAACAAATTGGAGCATATTATTTGGGCATTTGGTGATTCAATTCGAGCATATGAAGCCTTCGGAGATGTGATTGTTTTTGATACCACTTATCGAATAAATCGTTACGAAATGCCGCTTGGAATTTTGGTTGGGGTCGATAATCATGGCAATTCCATTTTCTTTGGTTGTGTTCTATTGAAAAATGAGAAGATTCCTTCCTTTACATGGGCTATAAAGACTTTTCTTAGTTTTGTTAAAGGAAAATATCCACAAACAATTCTTACAGATCAAGATCTTGCAATGAAAGAAGCTATTTCAATGGAATTACCAAACACAAAACATGCATTTTGCATATGGCATATCCTGGCAAAGTTACCAACTTGGTTTTCTCTTCCATTAGGGTCGAGATACGATGATTTTAAAGATGAGTTTTATCGATTATACCATTTAGAATGTGAAGATGATTTTGAGAGGGAATGGAAATTGATGGTTGAACATTTTTGTCTTAGCAAGGATAACCATATTGACCTGCTCTATTCGCTTCGTCAATTTTGGGCACTAGCTTATTTGAAGGACTTCTTTTTTGCTGGAATGACTACAACTGGACGTTCAGAATCTATAAATTCATATATAAAAAGATTCTTGGGAGCCAATACAAGTCTGACTGATTTCATAAATCAAGTTGGGGTTGCTGTTAACATTAGAAATCAAGCTGGAGAAGAAGCAAGAATGCGCCAAAAGTACCATAATCCTCGTATTAGAACGTGTTTTCCTATTGAGGAACATGCCGCATCTATTCTTACACCTTATGCCTTTAAGTTGATTCAACATGAGATTGAGTTGTCTACAAAATATGCGGCAACTGAAACTAATAATAGTGTATTCATTGTGCGACATCATACCAAAAGTGACGGAGGCCGCTTTGTAAGTTGGATACAAGAAAATGAATCAATCCATTGTTCTTGCAAGGAATTTGAATTTACTGGGATATTATGTAGACATGCTTTTCGGGTGCTTGTGATGAAAAATTATTTTACCCTCCCTTCCAAGTATCTTCCTCTTCGTTGGAGACAAGAAAGTTCATTGATTCCAAAATCTAGTCACATGATTAACAACAATGGTGGCTCGCTTGTTAAGTTTAGGTCCTTAATTCAAAGTCTAGAAATTGAATCGTTGAAGACAAAATTACGAGAACAAGCTGCAACTAGAGAGTTAGAGAAAGCCATTCAAGTGATTAAAGCCATGCCTGAAATTGAAGAAAAGTTGGTGGGTGTTGATTCTACGGTTCCAGATAATGATGAGTTGAATGTTGAAAATCCTTTACCTTCAAAAACAAAAGGTCGACCAAAAGGATCAAGGCTAAAAGGAGGAGTTGAAATTGCAAAGAAACCTCGTCATTGTCATGTTCCAAATTGTGGTGGAACTGATCATGACTCGAGGAATTGTCCAAATAAAAAGAAAAATATTGAAGCATTACCTTCTCAATCTCCTAATAAGAGGATGAAGGGTTGGAGAAAATCATCTTAA 2280 0.3504 MSSEGRNEAIDGSLEYEDDEIIDSLTTVPEPQHGPLPQANHIDDGVLYEGKVFNSDDEAYNFYCLFARKNGFSIRRHHVYKSIKNQSDDNPLGVYKREFVCHRAGTISVDKDNEVEGKRKRKSSRCNCGAKLLVNITTINSEKKWVVKYFNNNHNHELLDDKEVKFLPAYRSIPTIDQDRILLLSKAGCSVSLIIRVLELEKNIDAGNLPFLDKDIRNFIQSQSGIGKEFDASNVLKLCKSLKDADNAFEYEFSIDENNKLEHIIWAFGDSIRAYEAFGDVIVFDTTYRINRYEMPLGILVGVDNHGNSIFFGCVLLKNEKIPSFTWAIKTFLSFVKGKYPQTILTDQDLAMKEAISMELPNTKHAFCIWHILAKLPTWFSLPLGSRYDDFKDEFYRLYHLECEDDFEREWKLMVEHFCLSKDNHIDLLYSLRQFWALAYLKDFFFAGMTTTGRSESINSYIKRFLGANTSLTDFINQVGVAVNIRNQAGEEARMRQKYHNPRIRTCFPIEEHAASILTPYAFKLIQHEIELSTKYAATETNNSVFIVRHHTKSDGGRFVSWIQENESIHCSCKEFEFTGILCRHAFRVLVMKNYFTLPSKYLPLRWRQESSLIPKSSHMINNNGGSLVKFRSLIQSLEIESLKTKLREQAATRELEKAIQVIKAMPEIEEKLVGVDSTVPDNDELNVENPLPSKTKGRPKGSRLKGGVEIAKKPRHCHVPNCGGTDHDSRNCPNKKKNIEALPSQSPNKRMKGWRKSS* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3438 759 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 46 672 - -
Mtr1g3438 759 Pfam FAR1 DNA-binding domain 61 159 IPR004330 -
Mtr1g3438 759 MobiDBLite consensus disorder prediction 720 759 - -
Mtr1g3438 759 SMART 26again6 569 596 IPR006564 GO:0008270
Mtr1g3438 759 ProSiteProfiles Zinc finger SWIM-type profile. 559 594 IPR007527 GO:0008270
Mtr1g3438 759 MobiDBLite consensus disorder prediction 720 736 - -
Mtr1g3438 759 MobiDBLite consensus disorder prediction 680 706 - -
Mtr1g3438 759 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 46 672 IPR031052 GO:0006355
Mtr1g3438 759 Pfam MULE transposase domain 281 374 IPR018289 -
Mtr1g3438 759 Pfam SWIM zinc finger 567 591 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3438 Mtr-Chr1 45684192 45687058 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr1g3438 FAR1 3.9e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3438 - - var:108339217 873.618