Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3436 ATGACTGCTTCACGATTTTGCGTTGAGATCCTCCATTTTGTAGAGGTAACACAAGAGTGGCCTGGACTTCCTAGAGGTGTTAAATTTGATCCATCTGATCAAGAGATAATATGGCACTTGCTTGCAAAAGTTGGTGAAGGAAGTTCAAAACCTCACCCTTTCATCGATGCATTTATCACTACTCTTGATGTGAATGGGGGCATTTGTTATACTCATCCTCAGCATTTACCAGGTGTTTCACAAGATGGAATTGCTTCACACTTTTTCCATAGAACAGTCAAAGCTTATAGTACTGGAAGTCGAAAACGGCGAAGAATATGTGGTGGTAAAGAGTTTTCTTATGTCCGCTGGCACAAGACTGGAAAGACTAAACCTATCCTCTTGAATGGAGTTCAGAAAGGCTGCAAAAAGATTATGGTTCTTTATATGTTTCCAGAGAATGGAGGAAAAGGTGCAAAAACTAACTGGGTTATGCATCAGTATCATCTTGGAACAGAAGAGGATGAAAAGGAAGGGGGGCATGTAATATCCATAGTATTTTACCAGCAGCAACAGGCTAAGTTGGGAGAAAAAGATGATCAAGATGTTCGTGAAACCGCGGAAGCAACTATTGCGAATGTTGCTCTTATCACTCCCAACTTTGTGACCACTGAACCTCCTCTTATCACTCCCAATTTTGTAGACCAGGCACAAGAAACTCACCATATTCCTCAGTGTTCTTTTGTTTGTCTTCTACACCAGATTCTTGAAAATCTTCCTTGGTTAGAAGAATGGCTACTTAATAGTGAGGATGACTGTGAAGAGATGGATAACATTGACCTGCCGCTGAATCTATTGGATTCACAGCAACTTCCCGAAACATTTTCTTGGTTCGAAGATTTCATTCAAAGCCAGTCTCCGAAAAGACACAGGGAAAATGACGAACAAAAGAACCAGCCTAGTCTTTCGGCATATGCTCATCTAGGACCAGAGCAGTTGAAGAAAGACAAGGAAGAGTGCCAAAATCTTGACCACACTGGCAATGTACAGCTTGACTCAGAATCTTCCGACATTCGATTAAGTCAACAGGAATTCAGCTCACAGGAGCTATATCGCCTGCTGGGGTGGTAA 1110 0.418 MTASRFCVEILHFVEVTQEWPGLPRGVKFDPSDQEIIWHLLAKVGEGSSKPHPFIDAFITTLDVNGGICYTHPQHLPGVSQDGIASHFFHRTVKAYSTGSRKRRRICGGKEFSYVRWHKTGKTKPILLNGVQKGCKKIMVLYMFPENGGKGAKTNWVMHQYHLGTEEDEKEGGHVISIVFYQQQQAKLGEKDDQDVRETAEATIANVALITPNFVTTEPPLITPNFVDQAQETHHIPQCSFVCLLHQILENLPWLEEWLLNSEDDCEEMDNIDLPLNLLDSQQLPETFSWFEDFIQSQSPKRHRENDEQKNQPSLSAYAHLGPEQLKKDKEECQNLDHTGNVQLDSESSDIRLSQQEFSSQELYRLLGW* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3436 369 Pfam No apical meristem (NAM) protein 24 163 IPR003441 GO:0003677|GO:0006355
Mtr1g3436 369 Gene3D NAC domain 32 187 IPR036093 GO:0003677|GO:0006355
Mtr1g3436 369 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 7 365 - -
Mtr1g3436 369 SUPERFAMILY NAC domain 14 182 IPR036093 GO:0003677|GO:0006355
Mtr1g3436 369 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 7 365 IPR044799 GO:0003700
Mtr1g3436 369 ProSiteProfiles NAC domain profile. 23 182 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3436 Mtr-Chr1 45660676 45663553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3436 1 189 NAC Transcription Factor Family AT1G28470 53.608 7.22e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr1g3436 NAM 1.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3436 - - mtr:MTR_1g093670 681.404