Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3420 ATGGAAGTTCTGTCTCTCTCCGTTACATTCACCAAATCTCAAACCTTTCCCTCATTCAGACCAAAAAACACAACCCAAATTCACCAACTTCCAATAAAAACAAAACTACCCAACAAAAACAATCACTCTTCTTCTTGTTCCATTTCATGTAGTTCCTCTTTTACTAGAATTTCAGCAACAAGTAACCAAACATCAATTCCACAAACCGATATGTTGTTGTTCCCTAATGGAAATTCAAAGCATTGGGTTGTTAGAATGGATAAACCTGCTGTTGGTGTTGTTACCAAAGCTCAAATTGTTGACCATTATGCTCAAATTTTGACCAAAATCATGGGAAACGAGAAGGATGCACAAATGTGTATATATCATGTTTCATGGAAAACCAATTTTGGGTTTTGTTGTGAACTTGATGAGGATTGTGCACATGAGCTATCTGGTGTGCCTGGGGTCTTGTCTGTTCAGCCAGATGACAATTTTGAGTCTGAAAATAAGGATTATGAAGGTAGAAATTTGGAAAATAGTCTGAATATGCCAAATTCTTCTGAAGCAAGTCAGGAAGCTTCTGTGAAAACAAAGAAACTTTTTGTGACAGGGCTATCATTTTATACATCTGAGAAAACCTTACGCGCCGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAGTTATTATAGATAAAATTTCAAAAAGGTCCAAGGGTTATGCATTTATTGAATACACCACAGAGGAGGCTGCAAGTGCAGCACTCAAAGAGATGAATGGCAAGATTATTAATGGCTGGATGATAGTGGTAGATGTTGCCAAGACTACCCCACCAAGATACAACAAGGGTCATGCCAGACCATCTGCTTGA 855 0.3813 MEVLSLSVTFTKSQTFPSFRPKNTTQIHQLPIKTKLPNKNNHSSSCSISCSSSFTRISATSNQTSIPQTDMLLFPNGNSKHWVVRMDKPAVGVVTKAQIVDHYAQILTKIMGNEKDAQMCIYHVSWKTNFGFCCELDEDCAHELSGVPGVLSVQPDDNFESENKDYEGRNLENSLNMPNSSEASQEASVKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPPRYNKGHARPSA* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3420 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 270 IPR000504 GO:0003723
Mtr1g3420 284 Gene3D - 161 284 IPR012677 -
Mtr1g3420 284 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 54 283 IPR039206 GO:0016554
Mtr1g3420 284 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 54 283 - -
Mtr1g3420 284 SMART rrm1_1 193 266 IPR000504 GO:0003723
Mtr1g3420 284 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 74 160 IPR037045 -
Mtr1g3420 284 SUPERFAMILY RNA-binding domain, RBD 179 278 IPR035979 GO:0003676
Mtr1g3420 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 260 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3420 Mtr-Chr1 45468734 45472067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3420 184 277 C2H2 Transcription Factor Family AT2G19380 31.915 1.84e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3420 - - mtr:MTR_1g092860 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3420 1 45468734 45472067 Mtr1g3420 1 45468734 45472067 ECH