Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3401 ATGATTTCAACTGGGATTAACTTGGTGATGACTGTGATTGGTTTTGCTGTTAGTACAATGTTCATTGTTTTCGTATGCACAAGACTCATTTGTGCAAGAATTCACATGAATGCCAATAGAAGAAGATCCTTTCTCATTGCTTCTAGATCCAATCTCAGCTTGATGGAACGTGGTTGTCAAGGTCTTGAACGCATTGATGTAGCTAAATTTCCAGTTAAGAAGTACAGTGACAAGTTTTTTGCAGCTGAAGAAAATTCTCAATGCACAGTTTGTCTCTCAGAGTACCAAGATGAAGATACACTGCGTATCCTCCCTCATTGCGGACACTCCTTCCATATGGCCTGCATAGACTTATGGCTGCAGCAGAATGCCACTTGTCCTGTTTGCCGAGTATCATTGCGTGAATTTTCTGAGACAACGCGATCAATGCAACCTGTATATAGCTCCCATCATGGGATGGAGTCCTTTGACACTCATCATTATCACTGTATAATGGCCGATAATGGATTATTGACAAGAACCCCTGATAACCGTGGGGTGAACCCTATTCAAGAGGATCAGTTTCCATCTGAGGGTGGTGGAGCAGTTGATATGGACAGTATCACCTCCTTAAGTCAGGGTGATTTCATTAAAGATGAAGAGAAGAAGCATGTAGAGAGCCCATCAAATTTATAG 675 0.4178 MISTGINLVMTVIGFAVSTMFIVFVCTRLICARIHMNANRRRSFLIASRSNLSLMERGCQGLERIDVAKFPVKKYSDKFFAAEENSQCTVCLSEYQDEDTLRILPHCGHSFHMACIDLWLQQNATCPVCRVSLREFSETTRSMQPVYSSHHGMESFDTHHYHCIMADNGLLTRTPDNRGVNPIQEDQFPSEGGGAVDMDSITSLSQGDFIKDEEKKHVESPSNL* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3401 224 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Mtr1g3401 224 PANTHER OS11G0150450 PROTEIN 1 223 - -
Mtr1g3401 224 PANTHER OS11G0150450 PROTEIN 1 223 - -
Mtr1g3401 224 SUPERFAMILY RING/U-box 82 136 - -
Mtr1g3401 224 SMART ring_2 88 129 IPR001841 -
Mtr1g3401 224 Pfam Ring finger domain 87 130 IPR001841 -
Mtr1g3401 224 MobiDBLite consensus disorder prediction 175 224 - -
Mtr1g3401 224 MobiDBLite consensus disorder prediction 208 224 - -
Mtr1g3401 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 135 IPR013083 -
Mtr1g3401 224 CDD RING-H2_PA-TM-RING 87 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3401 Mtr-Chr1 45260906 45263909 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3401 21 133 C3H Transcription Factor Family AT4G10150 39.167 3.91e-21 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3401 - - aprc:113873018 384.03