Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3399 ATGAGTGACCTATATGGGTTACCGGAGGATCTCCGGCGGTTGATAACATCATCAAGAAACACTACACATCTACCAGCAGAACCACCATGTTTGTATGGTGGTGCTGCTACTTTTCCTCCACCAAATTATTCCTATGACCCTATGATGGTTGGTGATGTTTTCTACCCTCGTAGTAACTTCACTCACCACCACTATGACTATTCCTCCACTGTTAACCCTACAACTACCACTATAGCTGCTGCTTCAAATTCAGATCATGCTACTGCTTCTACTGCATTCTGTGTAGGTTTAGAAACTTCTGATAAAGGATGGCTTGGTAACTTTGATTCTTGTAACAACAGATGGCCCAGACAAGAGACTCTTTCTCTTCTAGAAATCAGATCTCGTCTTGATTCTAAGTTCAGAGAGAATAATCAGAAAGCACCCTTGTGGAATGAAATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAAGAAAAGTTTGAGAATTTGTACAAGTATTACAAGAAGACCAAGGAAGGTAAAGCTAGTAGACAAGATGGTAAGCACTATAGATTTTTCAGACAGCTTGAAGCAATATGTGGAGAACCAAACACAAATTCTCACGCCTCAACTTTAGACAAAATTACCCCTAATGCTTCCTTTGTTGCTACTCAAACTCCAACCTTCACAATTAACCAAGAAAATACTAATGGTGTTGATCACAATTTGATCCATAACCACAAGTACTCACAAAGCCTAAGTTTCTCGAACTCGTCTGAATTTGAGACATCCTCATCTGAAAATAACGATGAGGATCTCTCAACTATTGCACACACTATGAAATCGTCGAAGGAGAAAGGGCAAAGTGGTCATAGGAGGGCAAGGAAAAGTTGGAGAGGTAAAGTTGAGGAGATTGTAGATTCTCACATGAAAAATATTATTGAGACTCAAGATGCTTGGATGGAGAGAATGTTGAGTGTTGTTGAACAAAGAGAACAAGAGATGGCATCAAAGGAAGAAGAAAGGAAGAGAAAAGAGTCAATGAGGTTTGATCAAGAAATACATGAACTTTGGGCTAAAGAAAAAGCATGGGTTGAAGCAAGAGATTCTGCATTGTTAGAAGTTGTAAGAAAACATATTGGGATACAACTTGAAGCACCAAATAAGAGTAAGAGCCAAGAAGCAAATGATACAACAAATTATGAATACCCTTTTGAAAGTGTGGATAATATTCATAGATGGACAGAAATGGAGATTTCAAATTTGATACAACTAAGGAGTGGTTTTGAACATCAAGTAAGAGAAAAGGGATATTTGGATGACGGTGTTTGGGATGAAATAGGTGAAAGAATGGTTTATATGGGATTTAATAGGAATGGAGCTGAGTGCAAGAAAATATGGGATGATATTAGTATGTCTCTAAGAAGGACAGTGGACTGTGGAGTCAAAAACACAAGGCCTTGGTGTTTGGGACTTAAGGTGACAGATGATGACGACCTTTGA 1506 0.3865 MSDLYGLPEDLRRLITSSRNTTHLPAEPPCLYGGAATFPPPNYSYDPMMVGDVFYPRSNFTHHHYDYSSTVNPTTTTIAAASNSDHATASTAFCVGLETSDKGWLGNFDSCNNRWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGEPNTNSHASTLDKITPNASFVATQTPTFTINQENTNGVDHNLIHNHKYSQSLSFSNSSEFETSSSENNDEDLSTIAHTMKSSKEKGQSGHRRARKSWRGKVEEIVDSHMKNIIETQDAWMERMLSVVEQREQEMASKEEERKRKESMRFDQEIHELWAKEKAWVEARDSALLEVVRKHIGIQLEAPNKSKSQEANDTTNYEYPFESVDNIHRWTEMEISNLIQLRSGFEHQVREKGYLDDGVWDEIGERMVYMGFNRNGAECKKIWDDISMSLRRTVDCGVKNTRPWCLGLKVTDDDDL* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3399 501 Coils Coil 322 349 - -
Mtr1g3399 501 SMART sant 111 174 IPR001005 -
Mtr1g3399 501 SMART sant 411 474 IPR001005 -
Mtr1g3399 501 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL-LIKE 30 484 - -
Mtr1g3399 501 Gene3D - 115 177 - -
Mtr1g3399 501 Gene3D - 415 477 - -
Mtr1g3399 501 ProSiteProfiles Myb-like domain profile. 113 172 IPR001005 -
Mtr1g3399 501 CDD GT1 113 179 - -
Mtr1g3399 501 Pfam Myb/SANT-like DNA-binding domain 413 489 IPR044822 -
Mtr1g3399 501 Pfam Myb/SANT-like DNA-binding domain 113 200 IPR044822 -
Mtr1g3399 501 MobiDBLite consensus disorder prediction 281 301 - -
Mtr1g3399 501 PANTHER - 30 484 - -
Mtr1g3399 501 ProSiteProfiles Myb-like domain profile. 414 472 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3399 Mtr-Chr1 45238374 45241341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3399 114 477 Trihelix Transcription Factor Family AT5G03680 42.455 6.63e-86 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Mtr1g3399 Myb_DNA-bind_4 4.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3399 - - gmx:100787750 586.26