Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3392 ATGACACCATCTGACAAGAGAATCCCCTTTAAGTTTCAACGAAGGCAATTTCCACTGGTTGTTTCGTTCGCTATGACTATCAATAAAAGTCAAGGGCAGTCGCTTAATCATGTTGGAGTCTACCTGTCTCAACCAGTTTTCTCTCATGGTCAGCTGTATGTTGCCCTGTCTAGAGTTACTTCTAAGAAAGGGTTGAAGGTATTGATTCATGATGACGAGGGTAATGATACAAACGTCACATCAAATGTGAAAAAGTCAGAAATGATGTATGAGAAAAGATTGTCCGAGTCCAAATACTTGGGAGGTGACTCTTTCACCTTGGTGGATTTGCATCACTTACCCTCCCTTCATTACTTGATGAAGTCACAAAGCAAGAAAGTGTTTGAATCACGACCTTATGTTATTGCTTGGGTGGCTGATATCACTGGAAGACCAGCTTGGTCTAAAGTCCTTGCCATGATACCTAATTAA 471 0.4098 MTPSDKRIPFKFQRRQFPLVVSFAMTINKSQGQSLNHVGVYLSQPVFSHGQLYVALSRVTSKKGLKVLIHDDEGNDTNVTSNVKKSEMMYEKRLSESKYLGGDSFTLVDLHHLPSLHYLMKSQSKKVFESRPYVIAWVADITGRPAWSKVLAMIPN* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3392 156 Pfam Helicase 19 66 IPR003840 GO:0004386|GO:0005524
Mtr1g3392 156 PANTHER ATP-DEPENDENT DNA HELICASE 1 83 - -
Mtr1g3392 156 Pfam Glutathione S-transferase, C-terminal domain 77 145 IPR004046 -
Mtr1g3392 156 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 29 156 IPR010987 -
Mtr1g3392 156 PANTHER DNA HELICASE-RELATED 1 83 - -
Mtr1g3392 156 Gene3D - 50 156 - -
Mtr1g3392 156 SUPERFAMILY GST C-terminal domain-like 83 152 IPR036282 -
Mtr1g3392 156 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 85 IPR027417 -
Mtr1g3392 156 CDD SF1_C_RecD 22 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3392 Mtr-Chr1 45160041 45166055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3392 89 153 Glutathione S-transferase Gene Family AT2G47730 55.385 5.37e-23 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3392 - K15255 mtr:MTR_1g492670 144.436