Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3358 ATGGCATTACAGCCTTTGTCTATCGTGATCTTACTGGCATATGGTGCACTGATAACTCTTATCTCATTGACACCATGTTGGTATGTCATGGTAACACATATCGAGAAACAAGCGAATTTGAGCTCAGAAAATATTGTAACCCAACTCCAATCAGAAATTAAGTACTCAGCTGAACTGTTGCACCCGATGAAATCATCATCGACAAATTTAGCAAGATTGTTGAGTTCAAGACTTGATTCTACTAACATCTCTTTCTCTGATATTGAAACCAAGGTTGCTCCATTATTATTTGAAGCATTTGAGACAATTCCTCACTTAACACAAATCTCATACATTGGAATGGAAGGTCTCTTTTTCTCATATTGCAGTGATCATGATCAAGCTCTTGCAATATACTCAAACTCATCATCAAATAAAATCTTGTACTATGTCCATCCTGTGAATAATGAAACTGGAAAGGTTTTTGGAGAAGCCATAATATCAAACTCTTCTATCAGCACAAGTTGGATTAAGAAAGCAGCTAATATTTCAAATGAATTTGCCTCATTGGGAACCAGGTGGACCAATGGACATGATCTTTTGTTTCTAAATTCTGCTAGAGTCAACAAAATAGGAGTGATCTCTCTAGGATTTTCAGCAAAAGCAATAACTGATTCTGTTACTCGTGTCAACCGTTTAGGAACGGGCACATATTTGGCTACAAAAGATGGACAAATTCTTGTCGAAGGGATTCAACATATTCGTTTGGTTATTTCTAATGATTCGGTTTCATTCCAATCAGTGAATGCAAATGGAGATGTGATAAAGAATTATGAGGGTACTGTCACATGCAAGGATGAAGCTAATGCTTCTAGTTTGAATATTCAAAATACTCAATATCTAATCCGCTGCTCTCCGATTGATATATTGGGAATAGAATCTGTGAATGTTTTGGCTGTACCAAGAAATGGATTTGATGTGAGTTACAAGAAAATGGGATTGGCTCTATTGAATGTAATGTTAGTAATGATACTTGTTGCTGTCTTAGGTTTTCTATTTATAGATGGTAGAGCCATAAGGAGAGAAATGCATTTGTGTGCCTCACTTATCAAACAAAAAGAGGCCACTCACCAAGCTGAGAGAAAAAATATGAACAAGAGCCTCGCCGTTGCTAGCGCTAGCCATGATGTTCGCACTTCTCTCGCAGGCATTACTGCTCTCATAAAAATTTCATCTAAGTTAGTTCCACCTGGTTCAGAATTGGCTTCCAATTTAATCCAAATGGAGGATTGTACACAAGACTTACTAGGACTATTGAACTCTATACTTGACACAAGCAAAATTGAGGTAGGAAAAATGGAACTTGTGGAAGAAGAATTTGATTTATCTCATTTCTTGGAAGAAGTGGTTGATATATACCATCTTGTGGCGATGGAGAAAGGTGTAGATCTTGTATTGGACCCTTGTAATGGTTCTGTTATAAAATATTCGCGCGTTAAAGGCGACAGGGGAAGACTTAAACAAGTTTTGTGTAATTTACTGAACAATGCTGTTAAATTTACAAATGAAGGACACATAACGGTTCGAGTGTGGGCTCGGAAGCAAACATTAAGTAGCTCAATAATCAAGACTAACCAAAATAGTTTCATGAAACAATTGTCATGGTTGTTTTCTAAGAAAAAAAATGAAGCAGATGAGGACATAGAAAAAACTATGAATTCAATTCAACAAGATCCTCCGCGTTCTATGGATTTCACATTTGAAGTTGATGACACAGGAAAAGGAATTCCTAAAGAGAATTACAAGTCTGTATTTGAGAATTATGTTCAAGTCAAAGAAACTAATCCTGTCCAAGAAGGAACAGGCTTAGGACTTGGAATTGTGCAGTCTTTGGTACGTTTGATGCATGGAGATATTGAAATTGTGGACAAGAATATTGGTGAAAAAGGAACATGTTTTAGGTTCAATGTTCTCCTCGGTTTATGTGAAGGTGAAACAGTGACAGATTTTAGCACAAAGGAAGGTCTTGAGTATGGAACAAGTAACGGCACTCAAGCTCGAGGGAGAACCACTCATGCTACTAGTTCTAGTTCAAACATTTGTTCCATGAGTCCCATGTATCATATGTGCAACTCTAGTCCTAGGCTCGAGCCATCCCGTGTTGTTCTTTTCATTGGAAATGTGGAGCGTCGGAGGACTTGTAAAAGGTTTATGAAGAGCTTAGGGATTAAAGTTAAGGTTGTGAAGTGTCAAAAAGATCTGTTTGATACTCTAGAGGAGATCAAACAGAAAGGTCGTCGTTCAAATGGCCCAAGTTCTCCAGAATCCTCTTCCAATTTGAGTTCTTCTCATAATTCATTTTCTAGAGCTAAAGGTGTTCCCTTGAGTTTTATGGATGGAACTGAGTATATGTCTCCAGTGTTCAAAAAGACAAACTTCGGAACTGTAGCATGTTTTGTCTTGATTGTCATCGATGCAAATGCAGGATCGTCATTTTCTGAACTCTTTGGGATTGTATCCAAATTCAAGAAAGGCCTTTCGAACTCTTGTAACGTTGTTTGGTTGGATAATCCACATATGCATCGTATCGATTCCAGAATAATTGATCAAAATGACATTGTCATATCGAAACCATTTCACGGTAGTCGTTTGTTCCAAGTCATAATGCTTCTTCCTGAGTATGATAATGGTAGTGTTTGGCAAAGCATTAAGAAACCTCACACTAGAAATTCTCCGGTTCACCAAGGAGAAATTCAAGAATGTGAAGACTCAAGCTGTTACAAACCTTTGCATTGCAAGAAGTTTTTGGTTGTTGAGGATACTAAAATTTTACGTGTTATAGCGACAAATATATTGGGTTCGCTTGGTGCAACTGTCGAACAATGTGAGAATGGCAAAGAAGCTGTAATGCTAGTTGTTGAAGGTCTAAAAAGAGATGATCCTAATCCTCCTTATGATTACATCTTAATGGATTGCCAGATGCCGGTGATGGATGGATTTGAGGCAACAAGGCGGATACGAGAGATGGAGAAGCCGTTCGGTGTTCGTATTCCTATCATTGCATTAAGTGCAGATATTGATAGATCGACGACGGTGACTGGAATGGACTTTTATATAGAGAAGCCACTTAGAAAAGAGCATTTACTTGAAGCCATCAGAATCTTAAACAGTTAA 3153 0.3777 MALQPLSIVILLAYGALITLISLTPCWYVMVTHIEKQANLSSENIVTQLQSEIKYSAELLHPMKSSSTNLARLLSSRLDSTNISFSDIETKVAPLLFEAFETIPHLTQISYIGMEGLFFSYCSDHDQALAIYSNSSSNKILYYVHPVNNETGKVFGEAIISNSSISTSWIKKAANISNEFASLGTRWTNGHDLLFLNSARVNKIGVISLGFSAKAITDSVTRVNRLGTGTYLATKDGQILVEGIQHIRLVISNDSVSFQSVNANGDVIKNYEGTVTCKDEANASSLNIQNTQYLIRCSPIDILGIESVNVLAVPRNGFDVSYKKMGLALLNVMLVMILVAVLGFLFIDGRAIRREMHLCASLIKQKEATHQAERKNMNKSLAVASASHDVRTSLAGITALIKISSKLVPPGSELASNLIQMEDCTQDLLGLLNSILDTSKIEVGKMELVEEEFDLSHFLEEVVDIYHLVAMEKGVDLVLDPCNGSVIKYSRVKGDRGRLKQVLCNLLNNAVKFTNEGHITVRVWARKQTLSSSIIKTNQNSFMKQLSWLFSKKKNEADEDIEKTMNSIQQDPPRSMDFTFEVDDTGKGIPKENYKSVFENYVQVKETNPVQEGTGLGLGIVQSLVRLMHGDIEIVDKNIGEKGTCFRFNVLLGLCEGETVTDFSTKEGLEYGTSNGTQARGRTTHATSSSSNICSMSPMYHMCNSSPRLEPSRVVLFIGNVERRRTCKRFMKSLGIKVKVVKCQKDLFDTLEEIKQKGRRSNGPSSPESSSNLSSSHNSFSRAKGVPLSFMDGTEYMSPVFKKTNFGTVACFVLIVIDANAGSSFSELFGIVSKFKKGLSNSCNVVWLDNPHMHRIDSRIIDQNDIVISKPFHGSRLFQVIMLLPEYDNGSVWQSIKKPHTRNSPVHQGEIQECEDSSCYKPLHCKKFLVVEDTKILRVIATNILGSLGATVEQCENGKEAVMLVVEGLKRDDPNPPYDYILMDCQMPVMDGFEATRRIREMEKPFGVRIPIIALSADIDRSTTVTGMDFYIEKPLRKEHLLEAIRILNS* 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3358 1050 SUPERFAMILY CheY-like 923 1046 IPR011006 -
Mtr1g3358 1050 SMART HisKA_10 378 444 IPR003661 GO:0000155|GO:0007165
Mtr1g3358 1050 MobiDBLite consensus disorder prediction 760 781 - -
Mtr1g3358 1050 MobiDBLite consensus disorder prediction 754 781 - -
Mtr1g3358 1050 ProSiteProfiles Response regulatory domain profile. 927 1049 IPR001789 GO:0000160
Mtr1g3358 1050 CDD HisKA 376 440 IPR003661 GO:0000155|GO:0007165
Mtr1g3358 1050 PANTHER TWO-COMPONENT HISTIDINE KINASE 34 1046 - -
Mtr1g3358 1050 Gene3D - 349 442 - -
Mtr1g3358 1050 PANTHER HISTIDINE KINASE CKI1-LIKE 34 1046 - -
Mtr1g3358 1050 SMART HKATPase_4 494 654 IPR003594 -
Mtr1g3358 1050 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 366 446 IPR036097 GO:0000155|GO:0007165
Mtr1g3358 1050 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 494 652 IPR003594 -
Mtr1g3358 1050 Gene3D - 906 1048 - -
Mtr1g3358 1050 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 433 649 IPR036890 -
Mtr1g3358 1050 Pfam Response regulator receiver domain 929 1046 IPR001789 GO:0000160
Mtr1g3358 1050 ProSiteProfiles Histidine kinase domain profile. 385 654 IPR005467 -
Mtr1g3358 1050 PRINTS Bacterial sensor protein C-terminal signature 578 592 IPR004358 GO:0016310|GO:0016772
Mtr1g3358 1050 PRINTS Bacterial sensor protein C-terminal signature 596 606 IPR004358 GO:0016310|GO:0016772
Mtr1g3358 1050 PRINTS Bacterial sensor protein C-terminal signature 612 630 IPR004358 GO:0016310|GO:0016772
Mtr1g3358 1050 CDD REC_hyHK_CKI1_RcsC-like 928 1045 - -
Mtr1g3358 1050 SMART REC_2 926 1045 IPR001789 GO:0000160
Mtr1g3358 1050 Gene3D - 443 656 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3358 Mtr-Chr1 44731941 44736273 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3358 1 1050 Histidine Kinase Gene Family AT2G47430 38.933 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr1g3358 HATPase_c 2.4e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3358 - - cam:101504256 1574.3