Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3351 ATGACAGATTTTGAATCACTACAGCAGAAGCCTGAATCTGCTGATGCTCATTCTGATTTTGACCATGGATTGGATGACTTTATGCGTGGTCATTTGGACGATTGTATGTCATTTGCTTCGTGTAGTTCTTCCCGTGTACAAGATGATGAGGATGATGAGAGTGATCAGTTGGTTCGGAGGAGACGGAGGTCTGATCTTGAAGGAGATGATTTAGCAGAGTCATCAGCTGCGCGGAGGCGCCATTCGCGAATTTTGAGCAGATGGGCTGCCAGACAGGCGCAGGAGATGATAACTACTATTGAGAGGAGGAATCGTGAGTCCGAGTTGATGGCACTTGCTGGTTTGCATACGGTGTCCATGTTGGATTCCTCTTTTTTGAGGGGGTCGCAGTCTCCTACTTCTGGTCAGGAGGGGGCTGTGGAGAGACCGAGCACTCAGGCATCTTCCATTCTGCAGATGTGGCGTGAATTGGAGGATGAACATATGTTGAATCGGGCACGTGAAAGGATGAGGGAACGTTTGAGGCAGCAAAGAAGTTCTGATGCTAATACCAATGTGTCAAGTACTATGTCTGACAGCCGAGGAAGTGAGAATCGAGGGAGTCTGGGGGATGCAAGTGAAAGTGAAAATGATTATGGTACCTGGTCACATGATCAGATTGGATCACGGAATGCACTTGGGAATCGTGATGGGTCTAGCAGGGAGCAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTCGGGGATGGATGGAAAGTGGTATTAGTGATCGTTCATCTAATGTGAGCCAAAGAAACACCAACCACAGATCAGAATGGCTTGGAGAAACAGAGCGTGAGAGGGTGAGAATTGTCAGGGAATGGGTGCAAATGACTAGCCAACAGCGAGGTTCACGTGGGAGCCGTAGGGATGCTCAAGTAAGTCAATCTGCTCCAGCTGATCGGACTCGTGATATTGCAGCTGACCATGATGAACGTCAACCAGAGCATGTTCGGCGGGACATGTTGAGGTTGCGTGGAAGACAGGCTCTAGTTGATTTGCTTGTTAGGGTAGAAAGGGAAAGACAAAGAGAGCTTGAGGGTTTGTTGGAGCATCGAGCTGTTTCTGATTTTGCTCATCGCAATCGTATTCAGTCATTGCTCAGAGGTAGATTCCTCCGAAACGAAACTGTTGAAGATGAGAGGCCTCCTTCTACAGCTGCAAGTGAATTAGTTCAGTTAAGACAACGGCACACGGTCTCTGGCATAAGGGAGGGGTTTCGCTCAAGATTAGAGAATATTGTCCGTGGTCAATCAAGCACCAATCCTGATGCCACATCAAATAGTAACACTGATGAAACAAGACATGATGAGAACCAATCAAACAATCTCATAGATGCCCAACAAGAAAATTATGACCAAGAGCAGATTAGGAGCCTGGAAACTGATGCACGTCAGTTTCCTAATCAAACAGGAACTTCGGAGAGTAGCACAAGCGAACCTATTAATTGGCAAGAAGCTAGTAATCAAGGAGGGAATTGGCAGGAACAAATTACCGAAAATGGGGGAGGAAACTGGCCGCAGAGAATTAATGGTACATTAAATCATCTTGGAGATGGAAGGGAAGCCAGTGATTGGCCACGAGAAACTCCCAGAAATTCAGCTGGGGATGATCCTCATCCACAGGAAGCTCAAAGAATTTGGCAGGACGATAACACAAGGGAAGCTGTTGGTAATTGGTCTGAAGGACCTTCTGCAGCTTCAAGGAATCGCCGTAGTGTTCCTTTTAGAAGGTTCAATAGATTTCATCCTCCTGACGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTATCTAACCTTCTTCGGAGTGGTTTCCGTGAAAGTCTGGATCAACTAATACAGTCATATGTTGAAAGGCAAGGTCATGCACCAATTGACTGGGATTTGCATCGAAACTTGCCTATGCCGACTCCTGCCTCACCGGAACGAGACCCTGATCAGCAGGGTGATGAACGTAATGAGGGACATCATGAAGCCATTAACAGACCTTCACCGGTGTTGCCTTCTCCACCAGTGCCCCCGCCACAACCACTTTGGCACCAAGATTTGCATCAAACTGGATGGTCTCGTCATACCATGCACCGCTCTGAAATTGAATGGGAGATAATGAATGATTTAAGATCAGATATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAATTGGAATTGCAGAGATCTGTCAGACAGGAGGTCTCTGCAGCTCTCAACCGCTCAGCTGGTGAAAATGGATTGGCTGCTGGGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAGAAAGGAACTTGCTGTGTATGTTGTGATAACCACATTGATTCGCTTTTGTACAGATGTGGACACATGTGCACATGTTCAAAATGTGCCAGTGAGTTAATTCGTGGAGGAGGTAAGTGTCCTTTATGCCGAGCGCCAATTGTTGAGGTGGTCAGAGCATATTCCATACTGTAA 2556 0.4679 MTDFESLQQKPESADAHSDFDHGLDDFMRGHLDDCMSFASCSSSRVQDDEDDESDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASSILQMWRELEDEHMLNRARERMRERLRQQRSSDANTNVSSTMSDSRGSENRGSLGDASESENDYGTWSHDQIGSRNALGNRDGSSREQSPDLGEVERERVRQIVRGWMESGISDRSSNVSQRNTNHRSEWLGETERERVRIVREWVQMTSQQRGSRGSRRDAQVSQSAPADRTRDIAADHDERQPEHVRRDMLRLRGRQALVDLLVRVERERQRELEGLLEHRAVSDFAHRNRIQSLLRGRFLRNETVEDERPPSTAASELVQLRQRHTVSGIREGFRSRLENIVRGQSSTNPDATSNSNTDETRHDENQSNNLIDAQQENYDQEQIRSLETDARQFPNQTGTSESSTSEPINWQEASNQGGNWQEQITENGGGNWPQRINGTLNHLGDGREASDWPRETPRNSAGDDPHPQEAQRIWQDDNTREAVGNWSEGPSAASRNRRSVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGHAPIDWDLHRNLPMPTPASPERDPDQQGDERNEGHHEAINRPSPVLPSPPVPPPQPLWHQDLHQTGWSRHTMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLAAGTSDDGSKWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCASELIRGGGKCPLCRAPIVEVVRAYSIL* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3351 851 MobiDBLite consensus disorder prediction 52 78 - -
Mtr1g3351 851 SUPERFAMILY RING/U-box 798 844 - -
Mtr1g3351 851 MobiDBLite consensus disorder prediction 669 684 - -
Mtr1g3351 851 MobiDBLite consensus disorder prediction 485 530 - -
Mtr1g3351 851 MobiDBLite consensus disorder prediction 179 234 - -
Mtr1g3351 851 MobiDBLite consensus disorder prediction 296 318 - -
Mtr1g3351 851 MobiDBLite consensus disorder prediction 125 147 - -
Mtr1g3351 851 ProSiteProfiles Zinc finger RING-type profile. 799 838 IPR001841 -
Mtr1g3351 851 MobiDBLite consensus disorder prediction 172 245 - -
Mtr1g3351 851 MobiDBLite consensus disorder prediction 41 78 - -
Mtr1g3351 851 MobiDBLite consensus disorder prediction 689 703 - -
Mtr1g3351 851 Coils Coil 728 748 - -
Mtr1g3351 851 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 851 - -
Mtr1g3351 851 MobiDBLite consensus disorder prediction 539 554 - -
Mtr1g3351 851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 785 849 IPR013083 -
Mtr1g3351 851 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 1 851 - -
Mtr1g3351 851 CDD mRING-HC-C3HC5_NEU1 798 838 - -
Mtr1g3351 851 MobiDBLite consensus disorder prediction 652 707 - -
Mtr1g3351 851 MobiDBLite consensus disorder prediction 296 335 - -
Mtr1g3351 851 MobiDBLite consensus disorder prediction 431 466 - -
Mtr1g3351 851 Pfam Zinc finger, C3HC4 type (RING finger) 796 843 - -
Mtr1g3351 851 MobiDBLite consensus disorder prediction 431 447 - -
Mtr1g3351 851 MobiDBLite consensus disorder prediction 485 561 - -
Mtr1g3351 851 MobiDBLite consensus disorder prediction 321 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3351 Mtr-Chr1 44659014 44665512 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3351 779 845 C3H Transcription Factor Family AT3G06140 39.706 3.16e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3351 - - gmx:100805607 1400.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3351 1 44659014 44665512 Mtr1g3351 1 44659014 44665512 ECH