Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3350 ATGAGACAAAAGGTGAAACTTGCATTTATCTCCAATGGTGCGGCAAGGAAGGCAACCTACAACAAACGAAAGAAGGGTATCATAAAGAAGGTGAGTGAACTCTCAACTCTCTGTGGAGTTTCTGCTTGTGCTATTATTTCAAATCCTTTTAATTCTCAAATAGAGGTCTGGCCAGATCGAGAGGGAGCAAAAAAGGTGATTGAGAGGTATCATAATTCATCTGCTAAAGATGAAACCAAGAATTTGAACCAAGAGGGTTTAATCATGCAAAATATTGCTAAAGCTAGAGACCGGCTAAGAAAGTTGGAAAACAAGAAACCTGAGAAAAAGATAGATCTGCTTATGCATGAGTGCATGCAAAACAAAAATTTGGTGGACAACCTCACTGCTGAAGAATTGAAAGATTTGGATGAGTTTATTGAGAAGAAGCTGAAAGAGGAAGATGATAAGATTAATGCAATTGAAACATGA 471 0.3758 MRQKVKLAFISNGAARKATYNKRKKGIIKKVSELSTLCGVSACAIISNPFNSQIEVWPDREGAKKVIERYHNSSAKDETKNLNQEGLIMQNIAKARDRLRKLENKKPEKKIDLLMHECMQNKNLVDNLTAEELKDLDEFIEKKLKEEDDKINAIET* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3350 156 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 153 - -
Mtr1g3350 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 9 49 IPR002100 GO:0003677|GO:0046983
Mtr1g3350 156 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Mtr1g3350 156 ProSiteProfiles MADS-box domain profile. 1 46 IPR002100 GO:0003677|GO:0046983
Mtr1g3350 156 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Mtr1g3350 156 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Mtr1g3350 156 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Mtr1g3350 156 Coils Coil 130 150 - -
Mtr1g3350 156 CDD MADS_SRF_like 1 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mtr1g3350 156 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Mtr1g3350 156 Coils Coil 92 112 - -
Mtr1g3350 156 PANTHER MADS BOX PROTEIN 2 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3350 Mtr-Chr1 44639376 44639846 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3350 1 144 Type I MADS-box Gene Family AT1G65300 44.138 7.08e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr1g3350 SRF-TF 4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3350 - - gmx:100792290 149.058