LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr1g3346	ATGGCTTTCCCTATCCTCTTCCTTCTCCTCATTTCCCTTCCATTTTCTTTTTCTTCAGCTGAACTCAACATTGATTACTACAAACAAACATGTCCTGACTTTGAAAAAATTGTTAGGGAAAACATCTTCAACAAACAAAGTGCAAGCCCGGCAACAGCACCGGGACTCCTCCGTCTCTTTTTCCACGATTGCATCACCGACGGTTGTGATGGATCGGTCCTTATCTCTTCAACGGCTTACAACCCTCACGCTGAAAAAGACGCAGAAATCAACCTCTCCCTCTCAGGGGATGGATACGACGTCGTTAATAAAATAAAAAATGCATTGGAAATAGCATGTCCTGGTGTTGTTTCATGTTCTGACATTGTTGCACAAGCAACAAGGGATCTTGTTAAGATGGTTGGTGGTCCATTTTATCCTGTGGCGTTAGGAAGAAAAGATAGTCGTGTATCAGAAGCTTCAAGAACTGAAAAAGCTCTTCCAACAACAAAAATGACAATGGACGATATTATTAGCAAATTTACCGTAAAGAACTTCACTATTAAGGAAATGGTTGCATTAACCGGTGCACATACAATTGGTTTCACTCACTGCAAAGAATTCAGCGACAGAATTTTCAACTTCAGCAAAACCTCTGAGACTGATCCTACACTTCATCCAAAATTGGCTAAAGGGTTGAGAGAAGTTTGCAAAAACTATACTACTGACCCTAATATGGCTGCTTTTAATGATGTTAGGTCACCAGGGAAATTTGACAATGCATATTACCAAAATGTGTTGAAAGGTTTGGGTTTATTGAGAACAGATGCTATGTTGGGTTCTGATCCAAGGACCAAGCCAATTGTGGAGTTATATGCAAGAGATGAACAAGCTTTCTTTCAAGATTTTGCTAGGGCAATGGAGAAGGTTTCTGTGCTTGGAGTGAAGACTGGTACACAAGGAGAGGTGAGGAGCAGGTGTGACCAATTCAACAAAATTCAGGGCTAA	987	0.4083	MAFPILFLLLISLPFSFSSAELNIDYYKQTCPDFEKIVRENIFNKQSASPATAPGLLRLFFHDCITDGCDGSVLISSTAYNPHAEKDAEINLSLSGDGYDVVNKIKNALEIACPGVVSCSDIVAQATRDLVKMVGGPFYPVALGRKDSRVSEASRTEKALPTTKMTMDDIISKFTVKNFTIKEMVALTGAHTIGFTHCKEFSDRIFNFSKTSETDPTLHPKLAKGLREVCKNYTTDPNMAAFNDVRSPGKFDNAYYQNVLKGLGLLRTDAMLGSDPRTKPIVELYARDEQAFFQDFARAMEKVSVLGVKTGTQGEVRSRCDQFNKIQG*	329

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr1g3346	328	CDD	secretory_peroxidase	21	323	IPR033905	GO:0004601\|GO:0042744
	Mtr1g3346	328	PRINTS	Haem peroxidase superfamily signature	53	67	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Mtr1g3346	328	PRINTS	Haem peroxidase superfamily signature	117	134	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Mtr1g3346	328	PRINTS	Haem peroxidase superfamily signature	135	147	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Mtr1g3346	328	PRINTS	Haem peroxidase superfamily signature	183	198	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Mtr1g3346	328	PRINTS	Haem peroxidase superfamily signature	244	259	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Mtr1g3346	328	PANTHER	PEROXIDASE 41	3	327	-	-
	Mtr1g3346	328	PANTHER	-	3	327	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Mtr1g3346	328	ProSitePatterns	Peroxidases proximal heme-ligand signature.	183	193	IPR019793	-
	Mtr1g3346	328	ProSitePatterns	Peroxidases active site signature.	53	64	IPR019794	GO:0004601

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr1g3346	Mtr-Chr1	44610587	44611573	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr1g3346	3	327	Peroxidase	AT5G47000	54.601	1.30e-128	369

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr1g3346	K00430		-	gmx:100795676	519.62

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