Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3344 ATGGAAAAAATGTCAGGAGAGGAGATTTGGTCATCCGCTGAAGAAGAATCCGGTGAATCTCTGTCTCCATTTGATAACAGGAGTGGCTACAATCCAAGAACAGGAATTTACCATTCTCTTGTTAAGCTTGAAACCAAACATGAAATCCCAACAAAGCTAGATCTCAACACTGCAACTCTTGTGCTATCACAGTTCTCACAAGGAGACCTTGCTGATGCAAGAATTGCATTCATTGACTTAAATACTGATCATAGTGTAACCTACGGTGAGATTCGTCGATCAGTTTATTCCCTTGCAACAGCTTTGTTCCATGGACTTGAGATTAGAAAAGGCGATGTCGTGTTTTTATTGTCTCCAAACTCAATCTTGTACTCAACTATATGCTTGGCTGTGTTATCAGTTGGTGCAATTCTGACCACTGCCAACCCTCTCAATACTAAGTCAGAAATTGCAAAACAAGTACATGATTCAGGTGCTAAACTAGCTATATCGGCACCAGAAGAGTTACACAAATTGGTCCCAACTGGAGTTCCTACAATTCTCACCTCAGGGACATCTGATGGAAAGTTTTTATCAGTTGAAGAGTTAATAGAAGGCTGCTATGATTCACATGAGTTGCCACATGTTCCTGTGGAGCAATCAGACACTGCCGCTATACTTTACTCTTCAGGGACTACTGGAGTAAGCAAAGGTGTTGTTTTGACACATGCAAATCTCATAACCATAATGAAACTACTCTGCTGGTCTGCTGATGTATCTACAGCACAAGACGATGTTTTCCTCGCCTTCATTCCAATGTTTCATGTCTATGGACTGATGTTCTTTGGATTTGGCTTGTTGTGTGTTGGTGTTACAACAGTTTTGATGCAAAAATACGATTTTCAAGCCATGCTTGTCGCTATCGAGAAGCACAAAATTAATAACATACCAGCAGTGCCACCAGTGATCCACTCATTAGTGAAACATGCTAGCAAAGATGGTTGTGATTTGTCTAGCCTAAGAAGAGTTGGCTCAGGAGCTGCACCTTTGAGTAAGGAAATGTCACTGGAGTTTAGAAAACTGTTTCCTTGGGTTGAACTAAGGGCGGGTTATGGACTAACAGAAAGTTGCGGGGGAGCTACGTTTTTCGGATCGGATAAAGATGCTAAAGCTCATCCAGAAGCATGTGGAAAGTTGATTCCAACTTTTTGTGCAAAAGTGGTAGACATTGAAACAGGGAAGCCTTTGCCTCCACTCAAGGAAGGAGAGTTATGGTTGAAAAGCGGTACTATTATGAAAGAATATTTAGGAAATATTGAGGCAACAACTGCAACAATTGATTCAGAAGGTTGGTTGAGGACAGGTGATCTTGGTTATATTGATGAGAATGGAATTGTCTACATAGTCGAACGAATAAAGGAGCTAATCAAGCACAAAGGGTATCAGGTAGCTCCTGCAGAACTGGAATCTGTGCTGCTAAGTCATCCCCTTATTGTTGATGCAGCAGTTATTCCGGTTGAAGATGAAGAAACTGGGCAGATACCGATGGCATATGTGGTGAGGGCAGCTGGTTCTCAACTAACAGAAGACCAAGTCATTCAATTTGTTGCAGGCCAGGTGGCTCCATATAAGAAAGTGAGAAGGGTGAGTTTTATTGACGGTATACCAAGGTCAGCTGCTGGCAAGATATTGCGAAAAGATCTTGTTTTGCAAAGCAAATACCAGCTTGTTTCTAAGTTGTGA 1722 0.4164 MEKMSGEEIWSSAEEESGESLSPFDNRSGYNPRTGIYHSLVKLETKHEIPTKLDLNTATLVLSQFSQGDLADARIAFIDLNTDHSVTYGEIRRSVYSLATALFHGLEIRKGDVVFLLSPNSILYSTICLAVLSVGAILTTANPLNTKSEIAKQVHDSGAKLAISAPEELHKLVPTGVPTILTSGTSDGKFLSVEELIEGCYDSHELPHVPVEQSDTAAILYSSGTTGVSKGVVLTHANLITIMKLLCWSADVSTAQDDVFLAFIPMFHVYGLMFFGFGLLCVGVTTVLMQKYDFQAMLVAIEKHKINNIPAVPPVIHSLVKHASKDGCDLSSLRRVGSGAAPLSKEMSLEFRKLFPWVELRAGYGLTESCGGATFFGSDKDAKAHPEACGKLIPTFCAKVVDIETGKPLPPLKEGELWLKSGTIMKEYLGNIEATTATIDSEGWLRTGDLGYIDENGIVYIVERIKELIKHKGYQVAPAELESVLLSHPLIVDAAVIPVEDEETGQIPMAYVVRAAGSQLTEDQVIQFVAGQVAPYKKVRRVSFIDGIPRSAAGKILRKDLVLQSKYQLVSKL* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3344 573 PANTHER AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN-RELATED 22 572 - -
Mtr1g3344 573 Pfam AMP-binding enzyme 74 470 IPR000873 -
Mtr1g3344 573 Pfam AMP-binding enzyme C-terminal domain 480 555 IPR025110 -
Mtr1g3344 573 Gene3D - 467 568 IPR045851 -
Mtr1g3344 573 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 22 572 - -
Mtr1g3344 573 SUPERFAMILY Acetyl-CoA synthetase-like 71 562 - -
Mtr1g3344 573 ProSitePatterns Putative AMP-binding domain signature. 219 230 IPR020845 -
Mtr1g3344 573 ProSitePatterns EF-hand calcium-binding domain. 79 91 IPR018247 -
Mtr1g3344 573 MobiDBLite consensus disorder prediction 1 27 - -
Mtr1g3344 573 CDD 4CL 49 561 - -
Mtr1g3344 573 Gene3D - 43 466 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3344 Mtr-Chr1 44591453 44594386 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3344 27 569 Monolignol Biosynthesis Gene Families AT4G05160 43.376 1.56e-148 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3344 K10526 - gmx:100783104 931.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2157 1 31676039 31691510 Mtr1g3344 1 44591453 44594386 ECH
Mtr1g3344 1 44591453 44594386 Mtr1g3344 1 44591453 44594386 ECH