Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3341 ATGGAAGAAACCGCTTTCTACCAAGGTCCTGGATTCCGATTCCACCCTACGGATGAAGAAATTGTTCGTTACTACCTCAAGAAGAAACTCACCGGAAATTTACCTTCTTGCTTTGATTATCTCGCTGTCATCGACATCTACAAATTCGAGCCATGGGACCTTCCCAAGTTGTCGAAGCTGAAGACAAGGGATTTGGAATGGTACTTCTTCACTGCGCTGGACAAAAAGTATGGTAATAGTATCAGGACGAATCGTGCTACTGATAGAGGTTACTGGAAGACTACTGGCAAGGATCGTGCCATCAAGAATGGAGAGGAGACTGTTGGAATGAAGAAGACACTTGTTTATCACTCGGGTCGGGCTCCGCATGGTGATCGAAGCAATTGGGTGATGCATGAGTATAGGATGATTGATGAGACTTTAGCCAAAGCTGGAGTTCAGGATGCTTATGTCCTGTGTAGGATCTTCGAGAAGAGTGGTTCGGGGCCTAAGAATGGGGAGAAGTACGGGGCTCCCTTTGTTGAGGAGGAATGGGAGAGTTTTGGTGAACAAGTGCTACCCTTGCCGCCTGTTGATAATGAACCTTTGAAACTAGAAGGGTTTACTCCTGATGTTGATGAACTCGTGAATCCCTTGGCAGTTTCTGTACCTGATGATGTACTGGTGGATCCCTTGGATGTTTTTTATGACGAGCTTTGGAATGAAAATCTGCCTGATTCTACTTATGAGGACTTTTTTGAAGCCCATGACCTCGACCAGGATCTTGTTACTAGTAACACAGTTGGAAGTGCTGAACTTCAATCCAACTTCTGTTATGGAGAGTGTAGTACCCATCCTCAGTATTCCCAAGCATTTATTAATGAACGTAAGCAATCGGAAGCCACTCTTGGTGTGTATGAATATGAGGTTGATCAGCCTAATAATATAGCTGATCTATATGGTGGGAATATCAATTCAGTGCAAGATGGATACAATGGTGGGACAAACCATAACGAAAATCCTTTGAATTTCAATTTTGCATCTGAGGTTGATCAGCCTAATAATATAGCTGATCTATATGGTGGGAATATCAATTCAGTGCAAGATGGATACAATGGTGGGACAAACCATAACAAAAATCCTTTGAATTTCAATTTTGCATCTGAGGAACTGGGTCAAGTCTTTCATGCCCCTGATTATATTACTGGTGTGACTGATGAGTACATGGAAACCAATGATATTGCTGAGATGGATCCTTCTGTTGCTGCAATGCTAGACGGGTCCCTTGCAGACCCTGATGATGACATCTCCAATTATATATGCTTTGATTCTCCTTTGAATGCAAGGAGTGAAAGCCCCATTGCCAGCTATGGACAGCCTATCATTGAGCAGAATGTGGAGGGCGAAACCTATGATAGTTCCTTGACAAACAAACATGTTTTTGAAGCACAACCTAGTGATGAAGTTTTACCAAAGGAGGATCTAGCAGCGTCAAATTGGGTCTCAGGAGATGCAAACACTTTTGTGAAGCATTTGTTGGCCAACATACCTGCTCCACCTGCATTTGCATCAGAGTTTCCTGCTAAGGAGTTGGCTTGTGAGATACACCCTGCAGCTGAGTCATCCAATTCAGCTCATATAACTGCAGGTATGATCAGCATTACAGACATTACTTTTAGAGGCAATGCGATGGATTGGATGGTGGGCAAGAATGGAGGTTTTAACACCGTTATGTCTACTGGGTTTTCCCAAACTGATGTTAACCCTGCTACTTTGGTGCCTATTTCTGGCTTGGTCTGTAGCAAAACTGCATTTATGTTATCACATGGTTGGGTTTTCTTGATGGGTTTCTCAGTTGTGATTCTTTCACTGAGTTTCAAGATCGGAAGCTTCATGTATACGGGTAAATGA 1890 0.4302 MEETAFYQGPGFRFHPTDEEIVRYYLKKKLTGNLPSCFDYLAVIDIYKFEPWDLPKLSKLKTRDLEWYFFTALDKKYGNSIRTNRATDRGYWKTTGKDRAIKNGEETVGMKKTLVYHSGRAPHGDRSNWVMHEYRMIDETLAKAGVQDAYVLCRIFEKSGSGPKNGEKYGAPFVEEEWESFGEQVLPLPPVDNEPLKLEGFTPDVDELVNPLAVSVPDDVLVDPLDVFYDELWNENLPDSTYEDFFEAHDLDQDLVTSNTVGSAELQSNFCYGECSTHPQYSQAFINERKQSEATLGVYEYEVDQPNNIADLYGGNINSVQDGYNGGTNHNENPLNFNFASEVDQPNNIADLYGGNINSVQDGYNGGTNHNKNPLNFNFASEELGQVFHAPDYITGVTDEYMETNDIAEMDPSVAAMLDGSLADPDDDISNYICFDSPLNARSESPIASYGQPIIEQNVEGETYDSSLTNKHVFEAQPSDEVLPKEDLAASNWVSGDANTFVKHLLANIPAPPAFASEFPAKELACEIHPAAESSNSAHITAGMISITDITFRGNAMDWMVGKNGGFNTVMSTGFSQTDVNPATLVPISGLVCSKTAFMLSHGWVFLMGFSVVILSLSFKIGSFMYTGK* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3341 629 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Mtr1g3341 629 Gene3D NAC domain 17 161 IPR036093 GO:0003677|GO:0006355
Mtr1g3341 629 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 9 187 - -
Mtr1g3341 629 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 393 624 - -
Mtr1g3341 629 Pfam No apical meristem (NAM) protein 10 136 IPR003441 GO:0003677|GO:0006355
Mtr1g3341 629 PANTHER NAC DOMAIN-CONTAINING PROTEIN 53-LIKE 9 187 - -
Mtr1g3341 629 PANTHER NAC DOMAIN-CONTAINING PROTEIN 53-LIKE 393 624 - -
Mtr1g3341 629 SUPERFAMILY NAC domain 7 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3341 Mtr-Chr1 44572347 44575576 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3341 419 621 NAC Transcription Factor Family AT5G04410 32.524 1.79e-16 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr1g3341 NAM 5.8e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3341 - - mtr:MTR_1g090723 1281.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3341 1 44572347 44575576 Mtr1g3341 1 44572347 44575576 ECH