Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3340 ATGGGTCACGAAGAACCTCTTTTACTTCCTCCACCCCCATCTGCTACCACAATCAACCCTTCACCACTCACAGTTTCAGTACCATCGCCTTCTGCGTCTGCTTCTGCGGCCCCACCAACTTCTCTTGCTCCTGGTTTTAGATTTCACCCTACTGATGAAGAACTTGTCATTTATTACCTGAAACGCAAGGTTTCTGGAAAACCCTTCAGATTTGATGCTATTGCTGAAGTTGATATCTACAAGAGTGAACCCTGGGATCTTTTTGATAAGTCAAGGCTGAAGACCAGGGACCAGGAGTGGTATTTTTTCAGTGCATTGGACAAGAAGTATGGAAATGGGGGCAGGATGAACAGAGCCACTCTTCAAGGTTACTGGAAAGCTACAGGAAATGATCGTCCAGTGAAGCATGACCTAAGGACCGTGGGGTTGAAGAAGACTCTGGTGTTTCATAGCGGCCGTGCTCCCGATGGTAAGAGAACAAATTGGGTCATGCATGAGTACAGGCTTGTTGAGGAAGAATTGGAGAGAGAGAGGGCTGGGGCTGGACCCTCTCAGCCACAGGAGGCGTTTGTGCTGTGTAGAGTGTTTCACAAAAATAACATTGGGCCTCCAAATGGACAACGGTATGCACCTTTTGTTGAAGAAGAGTGGGAAGAAGGATCGGGAATGGTTCCTGGGGCTGAGCCTGTGAGTAATGGTCCTGTGAGTAATGGTCCTGTTGACCGCCATCTGCGTCTTGAATGGAACGGTGGAGTTTCATGCAGTGAAGGAAGAAATCATGTTGTGCAGGATACTCAATCCAACAACAAAACTCCACTTGATGTGAACAAGCTGCCAATCGAAACTCAAAATCTTCTTGCTGTGTGCAAGAGGGAGAGCATGACTGAGTTTTCATCACCAGAAAAGGATGATTCTAAGCATATGCATGTTGATGATGAGTACCCATTACCCCCAACCGATAACCCGAAGCCAATACCCCAAATTTACAAAAGGCGGCGCTATAACTTGAACTCCAATCATTCTAATGTTTCTGGAGATTCATTCCACCCTAACAGTCAGGATCCATGCTCGTCCACAATAACCACTGCAGCGACAACTCTCCCGACAACTGCTGCTGCTGTCACAACTGCCAAACCTGCACCAAAGAAACATTTTCTGTCTGCACTGGTGGAGTTTTCCCTGCTAGAATCACTTGAATCGAAGAAGGAAAACCACACCTCAGTTCAGCCGGCAGATTTTGACTTGGCGAATCTTGAATCGTGTGTGCCTCCGAGTGTTGCAAAGTACATCAAATACTTGCAGAGTGAGACGCAGAAGCTTGGTGTTGAGAAGGAGACAATGCGGTTCGAGTTGACAAGTGCTCAAACCATGATTAACATTCTCCAGTCCCGTGTTGAAAATCTCAGCAAAGAGAACGAGGAGATGAAGATGATGATGAGAAATCCTTAG 1449 0.4665 MGHEEPLLLPPPPSATTINPSPLTVSVPSPSASASAAPPTSLAPGFRFHPTDEELVIYYLKRKVSGKPFRFDAIAEVDIYKSEPWDLFDKSRLKTRDQEWYFFSALDKKYGNGGRMNRATLQGYWKATGNDRPVKHDLRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVEEELERERAGAGPSQPQEAFVLCRVFHKNNIGPPNGQRYAPFVEEEWEEGSGMVPGAEPVSNGPVSNGPVDRHLRLEWNGGVSCSEGRNHVVQDTQSNNKTPLDVNKLPIETQNLLAVCKRESMTEFSSPEKDDSKHMHVDDEYPLPPTDNPKPIPQIYKRRRYNLNSNHSNVSGDSFHPNSQDPCSSTITTAATTLPTTAAAVTTAKPAPKKHFLSALVEFSLLESLESKKENHTSVQPADFDLANLESCVPPSVAKYIKYLQSETQKLGVEKETMRFELTSAQTMINILQSRVENLSKENEEMKMMMRNP* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3340 482 MobiDBLite consensus disorder prediction 19 38 - -
Mtr1g3340 482 SUPERFAMILY NAC domain 35 199 IPR036093 GO:0003677|GO:0006355
Mtr1g3340 482 MobiDBLite consensus disorder prediction 292 326 - -
Mtr1g3340 482 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 34 481 - -
Mtr1g3340 482 MobiDBLite consensus disorder prediction 295 316 - -
Mtr1g3340 482 PANTHER NAC DOMAIN-CONTAINING PROTEIN 78-LIKE 34 481 - -
Mtr1g3340 482 Gene3D NAC domain 51 201 IPR036093 GO:0003677|GO:0006355
Mtr1g3340 482 Coils Coil 451 478 - -
Mtr1g3340 482 ProSiteProfiles NAC domain profile. 42 198 IPR003441 GO:0003677|GO:0006355
Mtr1g3340 482 MobiDBLite consensus disorder prediction 1 18 - -
Mtr1g3340 482 Pfam No apical meristem (NAM) protein 44 169 IPR003441 GO:0003677|GO:0006355
Mtr1g3340 482 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3340 Mtr-Chr1 44564983 44570635 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3340 1 476 NAC Transcription Factor Family AT3G10480 43.339 5.97e-113 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr1g3340 NAM 1.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3340 - - gmx:100808783 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3340 1 44564983 44570635 Mtr1g3340 1 44564983 44570635 ECH