Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3338 ATGGCAAGAAGAAAGGTGAAGCTGGCCTTAATTCCCGATGACTCGGCAAGGAAGGCGAGCTACAACAAAAGAAAGAAGGGTCTCTTAAAGAAGGTAAGTGAACTCACCATTCTTTGTGATGTTCCAGCTTGTGCTATAATTTCCAGTCCTTTTGATTCTCGGACAGAGGTCTGGCCGCATCCAGAAGGAGCCAATAAGATAATTGAGAGGTTTCAAAATTTATCTGTGAAAGATGAAACTAGAAATGTGAGCCATGAAAGGTTTATCATGCAGACGATTGCCAAAGCCAGGGACAAACTAAGAAAGTTGAAATATGAGAATCATGAGCAAGAGTGGGATCTTTTTATGCTCATGAAATTGCAAGCCAACAACAATATTCTTGATGGACTGACTACTGAAGAAGTGAAGGATCTTGGAAAGCGTGCTGAGAAGAAGTTGAAGGAGGTTGATGAGAAGATTGATACACTTGATTGA 474 0.4093 MARRKVKLALIPDDSARKASYNKRKKGLLKKVSELTILCDVPACAIISSPFDSRTEVWPHPEGANKIIERFQNLSVKDETRNVSHERFIMQTIAKARDKLRKLKYENHEQEWDLFMLMKLQANNNILDGLTTEEVKDLGKRAEKKLKEVDEKIDTLD* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3338 157 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr1g3338 157 Coils Coil 93 113 - -
Mtr1g3338 157 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Mtr1g3338 157 PANTHER MADS BOX PROTEIN 2 155 - -
Mtr1g3338 157 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Mtr1g3338 157 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Mtr1g3338 157 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Mtr1g3338 157 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr1g3338 157 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr1g3338 157 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr1g3338 157 Coils Coil 139 157 - -
Mtr1g3338 157 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mtr1g3338 157 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3338 Mtr-Chr1 44541884 44542498 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3338 3 156 Type I MADS-box Gene Family AT1G65300 40.000 4.33e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr1g3338 SRF-TF 2.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3338 - - gmx:100792290 169.474