Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3335 ATGGAACCTGCCCCTGAACAACCAGAACAACAAATCTCTTTAGCCTCTAGAGAAATCACCAATATCATCAAAGGCAAAAGAACCAAAAGGGTTAGGCCACAATCTCCTATACCTTTCTCCATCACTGCTAATTCTTCAACTGGTGAAGGAGGAGGAGGAGGAGGAGAAAGAGAAGATTGCAACAATGTTGATGATGTTAACAATAATACCATCATTAACACCAACAACAATAATACATCTCCAACAACTTCTTATGTTGAAGAAAAACAAGACAGTACTGTTGTTATTGATGAAGAATATGATATGGCAAATTGTTTGATTCTATTGGCACAAGGACAAGCAAAGGAATCATCAACAAAGAACACTGATGATTTAGATGGTGGAATGATGAACTACACAAAATATAGCAGTAGAAAATTCATGGAAGCTGCTACTTTGGATTCTGGAAGAGCTGGTTTCTATGTTTATGAATGCAAAACATGCAACAGAACATTCCCTTCATTTCAAGCCCTTGGTGGCCATAGAGCAAGTCACAAGAAACCAAAAGCTTTAGCAATTGCTCAAGAGAAAAAGCACTTATATGATGATGATCAAGAGTTTCAATTCAAACCCAATCATAAATCAATTTCTCTTCAATTGAATAACAATGGTAAGGGAAATCTACATGGTGGAAGCAACAATAACAACAAGTCTAAGGTTCATGAGTGTTCCATTTGTGGTTCTGAATTCACATCTGGTCAAGCACTAGGTGGCCATATGAGGCGCCACCGTGCACCGGTGGGAACTTCTGCAGCCAACACCACACTCTCTTTGACAACAATGGCTTTGGAACCTGATGAAGATCATCCTAGAAAGAAAAGGAATGTTTTGTCTTTGGATTTGGATCTCAACCTTCCTGCACCTGAAGATGATCATAGAGAATCTAAGTTTGCCTTTGCTTCCAAGCAACATCAACAACAACAACAACAAAATGGCCAAAAACAACAACAGCAGCAGCAGCAACAACAACAAAAGCAACAAACAAATCTTGTCTTCTCTGCACCAGCTTTGGTGGATTGTCATTACTGA 1068 0.3904 MEPAPEQPEQQISLASREITNIIKGKRTKRVRPQSPIPFSITANSSTGEGGGGGGEREDCNNVDDVNNNTIINTNNNNTSPTTSYVEEKQDSTVVIDEEYDMANCLILLAQGQAKESSTKNTDDLDGGMMNYTKYSSRKFMEAATLDSGRAGFYVYECKTCNRTFPSFQALGGHRASHKKPKALAIAQEKKHLYDDDQEFQFKPNHKSISLQLNNNGKGNLHGGSNNNNKSKVHECSICGSEFTSGQALGGHMRRHRAPVGTSAANTTLSLTTMALEPDEDHPRKKRNVLSLDLDLNLPAPEDDHRESKFAFASKQHQQQQQQNGQKQQQQQQQQQQKQQTNLVFSAPALVDCHY* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3335 355 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 16 355 - -
Mtr1g3335 355 SUPERFAMILY beta-beta-alpha zinc fingers 155 256 IPR036236 -
Mtr1g3335 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 183 IPR013087 -
Mtr1g3335 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 256 IPR013087 -
Mtr1g3335 355 PANTHER ZINC FINGER PROTEIN ZAT5 16 355 - -
Mtr1g3335 355 MobiDBLite consensus disorder prediction 311 340 - -
Mtr1g3335 355 MobiDBLite consensus disorder prediction 313 340 - -
Mtr1g3335 355 MobiDBLite consensus disorder prediction 21 61 - -
Mtr1g3335 355 Pfam C2H2-type zinc finger 155 181 - -
Mtr1g3335 355 Pfam C2H2-type zinc finger 233 259 - -
Mtr1g3335 355 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
Mtr1g3335 355 MobiDBLite consensus disorder prediction 35 49 - -
Mtr1g3335 355 ProSitePatterns Zinc finger C2H2 type domain signature. 236 256 IPR013087 -
Mtr1g3335 355 Coils Coil 317 337 - -
Mtr1g3335 355 Gene3D Classic Zinc Finger 154 256 - -
Mtr1g3335 355 SMART c2h2final6 156 178 IPR013087 -
Mtr1g3335 355 SMART c2h2final6 234 256 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3335 Mtr-Chr1 44525566 44527297 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3335 15 355 C2H2 Transcription Factor Family AT5G04390 45.576 5.16e-85 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g3335 zf-C2H2_6 8.4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3335 - - gmx:100819786 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3335 1 44525566 44527297 Mtr1g2136 1 31442516 31443891 ECH
Mtr1g2136 1 31442516 31443891 Mtr1g3335 1 44525566 44527297 ECH
Mtr2g2814 2 41609954 41611152 Mtr1g3335 1 44525566 44527297 ECH
Mtr4g1656 4 29020799 29022014 Mtr1g3335 1 44525566 44527297 ECH
Mtr1g3335 1 44525566 44527297 Mtr1g3335 1 44525566 44527297 ECH