Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3333 ATGACGAGAAGGAAGGTGAAACTTGCCTTTATCTCTGATAACGCGGCAAGGAAGGCAAGCTTCAATAAAAGAAAGAAGGGTCTCATAAAGAAGGTAACTGAACTGACAACACTTTGTGATATTCCGGCTTGTGCTATAATTTCCAGTCCTTTTGGTTCTCAGATGGAGGTTTGGCCGAATCCAGAAGAAGCCAAGAAGGTAATTGAGAGGTATCAAAGTTATTCTTTGATAGACGAAAACAAGAATGTGAGCCATGAAAGATACATTATGCAGATGATTGCTAAAGGAAGGGATAAACTAAAAAAGTTGAAGCATGACAATCGTGAGCAAGAGCTGAATCTTTCTATGCTACGGAACTTGAAAAACAACAATTTGTATGAAGACCTAACTGCTGAAGAACTGAAAGATCTTGCTAAGCGTGTTGATAAGAAGTTGAAGGAGGTTGATGGCAAGATTGATACACTTGATTGA 471 0.3885 MTRRKVKLAFISDNAARKASFNKRKKGLIKKVTELTTLCDIPACAIISSPFGSQMEVWPNPEEAKKVIERYQSYSLIDENKNVSHERYIMQMIAKGRDKLKKLKHDNREQELNLSMLRNLKNNNLYEDLTAEELKDLAKRVDKKLKEVDGKIDTLD* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3333 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr1g3333 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr1g3333 156 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr1g3333 156 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Mtr1g3333 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr1g3333 156 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Mtr1g3333 156 PANTHER MADS BOX PROTEIN 2 154 - -
Mtr1g3333 156 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mtr1g3333 156 Coils Coil 93 120 - -
Mtr1g3333 156 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Mtr1g3333 156 Coils Coil 131 151 - -
Mtr1g3333 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Mtr1g3333 156 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3333 Mtr-Chr1 44513290 44514079 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3333 1 148 Type I MADS-box Gene Family AT3G05860 44.295 1.67e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr1g3333 SRF-TF 1.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3333 - - gmx:100792290 172.94