Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3326 ATGTTTTCTAGGTTGATACGTCCTCATGACCATGAAGGAAGTGTTGTTGTTGTTCAGGAAGATTCAAATCATCATCTTCACACTCACCTTGCTGCTTCTGACCCTTGTCTTGTTCTCACTTCTGATCCAAAACCTCGTCTTCGTTGGACTACTGACCTTCACCAACGCTTTGTTGATGCTGTCACTCAACTTGGTGGTCCTACCAAAGCCACACCAAAAGCGATCATGAGGACCATGAATGTCAAGGGTTTGACACTCTATCATTTAAAGAGTCATCTTCAGAAGTATAGACTCGGTAAGCAAGCTGGAAAAGATTTTGACGAGGGATGCAAAGATGGGTCATATCTTCTAGAAAGCCCTGGTACTGAAAACTCATCCCCAAAGTTACCAGCTTCTGATGCAAACGAGGGCCATGAAGTCAAGGAGGCATTAAGAGCACAAATGGAAGTGCAAAGTAAGCTACATTTACTAGTGGAGGCAGAGAAGCACTTGCAAATTCGCCAAGATGCAGAACGGAGATATATGGCCATGCTTGAGAGAGCATGTAAGATGTTGGCTGATCAATTTATCGGTGATACAACTATAGACACAGACATCCAAAAATTTCAAGAACTACCAAGTACTGAGCTAGGTGGAAATGGAATGCATATTTCAGAAGTACCATATATTCTCCAGCCTCAAGGGGCTAACTGCTCCACAGAAAGTTGCCTAACATCACTTGAGAGTCTCAGAGGATTGACACTAGAAGGATCACCTAGTGGGACAAAAAGGATGTTGGGCTTGGACTCCATGGTATCGCCTTTGATCTGGAGTGAAACTAACATGAGAACTCAAGGCATTCACTTAGCCCAAGTCAATCCTCAAGGAATAGCAAGGTATGGAATGTAG 888 0.4347 MFSRLIRPHDHEGSVVVVQEDSNHHLHTHLAASDPCLVLTSDPKPRLRWTTDLHQRFVDAVTQLGGPTKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQAGKDFDEGCKDGSYLLESPGTENSSPKLPASDANEGHEVKEALRAQMEVQSKLHLLVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGDTTIDTDIQKFQELPSTELGGNGMHISEVPYILQPQGANCSTESCLTSLESLRGLTLEGSPSGTKRMLGLDSMVSPLIWSETNMRTQGIHLAQVNPQGIARYGM* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3326 295 MobiDBLite consensus disorder prediction 114 136 - -
Mtr1g3326 295 Gene3D - 43 101 - -
Mtr1g3326 295 Pfam Myb-like DNA-binding domain 47 97 IPR001005 -
Mtr1g3326 295 Pfam MYB-CC type transfactor, LHEQLE motif 139 184 IPR025756 -
Mtr1g3326 295 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 295 IPR044848 GO:0003700
Mtr1g3326 295 SUPERFAMILY Homeodomain-like 44 99 IPR009057 -
Mtr1g3326 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 101 IPR017930 -
Mtr1g3326 295 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 44 99 IPR006447 GO:0003677
Mtr1g3326 295 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3326 Mtr-Chr1 44456721 44460426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3326 34 240 G2-like Transcription Factor Family AT3G24120 48.718 1.95e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mtr1g3326 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3326 - - gmx:100779871 440.654