Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3314 ATGAACATCGACAACAACGGCACCTCGGAACCTCCACACAACAACAACAACGGTTTTGACGCAAATGGGTTCACATATATCTTAATACTTGTATTTGGTCTCGTATTCTTGGTTCTTTCAATAGTTATTGCATGTGTTCGACTTCGTAGTTCACGAAGTCGAAACATTCTCAATATTTTGTCCGGTTTTCCACCACATCGTCATGAAGACTCAATCATGGAACAAGGACTTCGTCATCACACCGACACAAGTTTTGAAGGATACCCGAAACTGTTATACTCTCAAATTCAGAAGAATGGTTCTTCAACTTCAATTAGTTGCTCTATTTGCTTAGGAGATTATAAAGAAAGTGACATGTTGAGGTTACTTCCAGATTGTGGTCATCTTTATCATGTTGCTTGTGTTGATCCATGGCTCGTGTTACATTCCACTTGTCCCATATGTAGAAAATCATCACTAGCTTCAACCTAG 471 0.3928 MNIDNNGTSEPPHNNNNGFDANGFTYILILVFGLVFLVLSIVIACVRLRSSRSRNILNILSGFPPHRHEDSIMEQGLRHHTDTSFEGYPKLLYSQIQKNGSSTSISCSICLGDYKESDMLRLLPDCGHLYHVACVDPWLVLHSTCPICRKSSLAST* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3314 156 CDD RING-H2_PA-TM-RING 111 149 - -
Mtr1g3314 156 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Mtr1g3314 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 153 IPR013083 -
Mtr1g3314 156 SMART ring_2 107 148 IPR001841 -
Mtr1g3314 156 Pfam Ring finger domain 106 149 IPR001841 -
Mtr1g3314 156 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 15 155 - -
Mtr1g3314 156 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 15 155 IPR045899 -
Mtr1g3314 156 SUPERFAMILY RING/U-box 106 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3314 Mtr-Chr1 44353867 44354750 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3314 6 155 C3H Transcription Factor Family AT5G06490 35.393 4.86e-26 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3314 - - gmx:102663718 193.356