Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3309 ATGTGCTTGCGATTGCCTTTCTATTCAAAGAAAATCATGAGTTCCACATCTAACAAGTTGAGCCAGAGCAACAGGCTTCTTGCTGAAAAACCAGTAACTGAGGCTAATAATATTCAAAAAGTCTTGAAGATTAATGGAAACACAATTTCTTTGAAGAACTATGTACTTTCCTCTGAAGAACTGAACAAGCTTATTTCTGAGATACATAATGCTCTAAATGATCACAATCACGTTATTGATGATGATGACAAGCTACGGTTAGTTATAAACACAATCATGAAGCACTGTTTTGAATTATTGGAGAGAAAAACACGTTCTGCAAATGTAGATTCTGCAACATGTGAACGCAATCTATGGTGGATTGGAGGCTTTCGTCCTTCTCAACTTCTTCAGGTCATTCTGCCTCAGCTGAAACATATGTGCACTCAACAACAACTTTATGATATTTATAATCTTGGACAATCATGTCAACAAGCTGAATATGCTCTTGCACAAGGCATGATAGAACTCCAGCAAATCATTGATAAAGCAACATCAGCAGGTGACAAAGAGTATCAACAAATGTATGTACCTCAACACCTAAGCTTCTTCAAAGAGGCTGATAATCTTCGCCGGCAATTCTTGCATCAATTTTCTCGTCTCTTTACAATTTCTCAGCAAGCTGAGCTCATAGTTACTCTGAAGGAACAGCTGCATAATCCGCAGCCCCGGAGCTCACTTTGA 723 0.3845 MCLRLPFYSKKIMSSTSNKLSQSNRLLAEKPVTEANNIQKVLKINGNTISLKNYVLSSEELNKLISEIHNALNDHNHVIDDDDKLRLVINTIMKHCFELLERKTRSANVDSATCERNLWWIGGFRPSQLLQVILPQLKHMCTQQQLYDIYNLGQSCQQAEYALAQGMIELQQIIDKATSAGDKEYQQMYVPQHLSFFKEADNLRRQFLHQFSRLFTISQQAELIVTLKEQLHNPQPRSSL* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3309 240 Pfam Seed dormancy control 65 134 IPR025422 GO:0006351|GO:0043565
Mtr1g3309 240 ProSiteProfiles DOG1 domain profile. 21 240 IPR025422 GO:0006351|GO:0043565
Mtr1g3309 240 PANTHER TRANSCRIPTION FACTOR TGA9 13 240 - -
Mtr1g3309 240 PANTHER FACTOR BZIP PROTEIN, PUTATIVE-RELATED 13 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3309 Mtr-Chr1 44328569 44330286 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3309 59 229 Calmodulin-binding Proteins AT5G10030 39.474 2.28e-31 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3309 K14431 - mtr:MTR_1g090370 455.292