Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3305 ATGTCGGGGAATTTCAGATTCATGATGGATCAGAAGGATATTGTTAGATTCTTGACTACAACTATAGATAGTTTCATTCAAGATAGGTTAATCAACAAAGAACAAAGAACACAACATAAAGATCAATGTGCTGAGAGATTAGCAGCTGAAGATGGAAACACTGACAAAGAAACTGAGGTAGAATATTCTGATCAAGCAGTATTAGCAAATTTGGATTGGGGTATTGAGGCTCTTGAAGAAGCTATTAATACCTATAATATGGAAACTAAGCTTGCAAGATTAGATTATGCTGAGAAAATGTTGCAAGTGTGTGCAATGTTGAATCCTAAGCAAAAAACTGCTGGAGTACCAAATTCATATTTATCAGCTTGGGCACATTTGAATTTATCCTATTTATGGAAGTTGAGGAACAATATTAAGAGTTGTATTTATCATTCTCTTGAGATGTTCATTGTGGACCCTTTTTTCTCTAGGATTGATTTTGCTCCTGAATTATGGAAAAACCTGTTTCTTCCACATATGAGTTCAATTGTAGGGTGGTATTCAGAGGAGAGACATAAGCTTATGATGGAAGTGTTACCTGAATCTACTGATTTTTCTTATACTGCTGATTTTGATAAAGTTTTCAACGAGTCTTTGGTATTTTCTATGAGGCCGAATCAGCTTGAGAAACTGCAAAAACTTGAGCAGCTTTATGGAGAGTCATTAGATGAGAACACAAGGCTATATGCAAAATATTATAATGATTGTATGAACCCTGATTCTACCTCAAGCAAGAAGGTTGTTCCTATGTTGCCAATTGCTGAGCCGCCGATGACTCCTTTGCATGAGTTGAGCCGGTCTGTTCCTGATTTTGTAAAGTTTGGTCCTATATTGCCCAAGAGTTCTGGATTTTCTATGACAACAAGAAGATCTAATGATGGTTTAAATGAAACAACCAGAGAGAATATAGCTTCAAATTCCAACCATTCAAAGGGGGAACAATCATCACTATGGGCTGCTAAGGAGAGCATAATTGAAGAGATTGAAGACGATTTGGATTCTGAGCATTATGATGCATCTGTGGATTCCGATAAAATCAATATTTTCTCACCTGAACCTAAGAAAAATATCAAGGATGAAGATGTTGAACCAAAAGTATATCGATCAAACCAGAAGAATCAAATGAATTCTCCCAATATCTCTCCTATGGAATCTCCAAGAAGAGCTTCAAATTATTCATCTACAAATCCTCTCCGTAGGAAAAAAGAATCGAAGTTTTTGCGGTTACTATCTAATCGTTTTACGGGATCAATTGTTTCTGATCACTCTCTATCATCATCTCCAGACACGAGCTCCGATCATATTTTCACTGGCGATGAAGAAGTTATGGTCAGGAATAATATTAAGAGGAAGAATGATAGTCAAACACCAAGTATGAATCAAGACAATGAAAATAGTTTGGTGCTGAATGACAGTTCACATTGTGAAAGTGAAGATGGTTATCAAAGCTCTAGTTCATTTCCAAAACTAGAGAAACTGACTATTGGATCAAAACCACCAAAAGATTTTGTTTGTCCAATCACAGGTCAGATATTTAGTGATCCTGTCACCCTTGAAACAGGCCAAACCTATGAAAGAAAAGCTATTCAAGAGTGGCTTGGAACAGGAAACACAACGTGCCCCATCACGCGACAGGCTCTCTCCGCAAACATCTTGCCAAAAACAAACTATGTTTTGAAGAGATTGATAGTATCATGGAAAGAACAGAATCCTGAACTAGCTCAAGAATTCTCAAATTCTAACACACCAAGGGGTTCTTCATGTTCTCCCTCTGCAAAAGACATCACAATGGTTTCGAGTATACAAAGAACAACTGATTCACCAAGTCAGAAGTACAAAGACGATTACATTAGACAAAGGAACAACAGATTTACGAGGGTTTCTGTCGGTGCATCTCCAACTAGTGTGTTATCGCAAGCTGCAGTTGAAACGATTATAAATTCCTTGACACCTTACATCACAAGTCTATGTACATCAGAAAACTTGCAGGACTGTGAACAAGCTGTATTGGAAATAGCAAGATTGTGGAAGGATTCTAAGACCGATCCTCAGATTCATTCTTATTTATCAAAGCCAACAGTTGTAAGTGGTTTAGTAGAAATTCTCTCGGCTTCTCTAAATAGAGAAGTTCTGAGAAGATCAATTTATATTCTTTCAGAGCTAATCTTTTCAGATGAAAGAGTTGGAGAAACACTTAACAGTGTAGATTCTGATTTTGATTGCTTGGCTATGCTACTTAAGAATGGTTTGGCCGAGGCTGCACTACTCATTTACCAACTAAGGCCAGTTTTTGCTCAGCTTTCAGAACATGAACTAATACCCTCTCTTATCCAAGTGATCCAGAACAAAAGTGAGGATATAGATGATTTTCAGTTAGCAATAGACCCTAAAGCTGCCGCCATAGCAATTCTTGAGCAAATTTTAATAGGAGGGGATGAATATAATAGGTCAGTCAATGCTTCAAGTGTTATCTCAGCAAACGGAATTCCAGCCATAGTTAAGTATTTGGACAAAACCGAAGGAAGGAGACCTGTAATTTCCATACTTTTGTGTTGTATGCAAGCTGAAAAAAGTTGCAAGAGCTCAATAGCAAATAGAATTGAATTGTCACCTGTTCTTGAATTATTTCACGCTGGAAACGATAGCGTGAGAGGAATCTGTGTGGAGTTTCTCTCAGAACTGGTTCGATTGAATAGAAGGACGTCCAGCAACCAGACATTACAGATAATCAAGGATGAAGGAGCTTTCAGTACAATGCATACATTTCTTGTATATCTACAGATGGCTCCAATGGAACATCAAATTGCCGTTGCCAGTCTTCTTCTTCAACTTGATCTTTTGGCTGAGCCACGAAAGATGAGCATTTACAGGGAAGAAGCTGTAGAGACACTGATAGAAGCACTTTGGCAAAAGGACTTCTCAAATAATCAAATGAAGGCTTTAGATGCTTTGCTATTTCTTATTGGACATGTCACTTCCTCAGGAAAGTCATATACTGAAGCTGGATTGCTGAAGATTGCAGGATTTGATCAACCTTACAATGTTTTAATGAAGGCCGAGCAATTGGGGCACTCAGACAATGATTTCATGGAAACAATGGAGGATGAAAAAAACGCCATGAAATCTTGGCAGAAAAGGGTAGCTTCTGTACTTTGCAATCATGAAAACGGTTCAATATTTCAAGCTTTGGAAGAATGCCTAAAGAGTAACTCCTTAAAGATGGCAAAATCTTGCCTTGTCCTTGCCACATGGCTGACACACATGCTCTTTACTCTACCTGATACTGGTGTAAGGGATGTTGCTCGGAAATCCCTGCTTGAGGCACTTATGAATGTCCTCCAGTCATCCAAGAACCTGGAGGAAAAGATCCTAGCATCCCTAGCTTTGAAGTCTTTCATTAGTGATCCAACTGTTCACGAAGTACTTAGAGTTTATGCTAAAAGCATCTACAGAATCTTGAGGAAGCTGAAGAAATATTCAACAGTTGCAGCTGATATTTTGAAAGCCTTGCTAAACTTAAATTCTGTTGATGTGACAGAGTTGTGGAGTTGTAAAGAAGTAGTTGAGTTAGATTTGAGCTCAAATGGAGAGGTGCTTTCTTTGCATTACCTGAATGGTCAGGTCTTGAGTGGACATGCTGATGGAACTATCAAGGTATGGGACGCAAGGAAGAGAATACCTAGGGTGATTCAAGAAACTCGCGAGCACAAGAAAGCTGTTACATCTCTTTGTTCTTCAGTTGATAAACTATACAGTTCTTCCTTGGACAAAACAATCCGGGTTTGGACAATTAAACCTGACGGGATTAAATGTATAGATGTTTATGACGTTAAGGAGGCAGTGTATGAGCTAGCAGCCAATGCTAAATTGGCATGCTATGTAACTCAAGGAACGGGAGTTAAGGTTTTTAATTGGTTAGATGCTCCAAAGTTCATCAATTTCAACAAATATGTGAAATGCCTTGCTGTTTCCGGGGACAAACTGTACTGTGGTTGCTCTGGTTACAGCATACAGGAGGTTGACTTGTCCAAATATACATCAACTTCATTCTTCACTGGTACAAGAAAATTGTTGGGAAAACAAACCATACACTCCCTTCAAATTCATGATGATTTGCTCTTTGCTTGTGGTTCTTCTATTGATGCAACCGCAGGAAAGATATTTTCACTTTCCTCCAAAATGGTGGTGGGATCGCTATCAACTGGACTCGACGTCCATCGTGTAGCCATCAACAGTGACTTCATATTTGCTGGTACGAAATTTGGCACCATTGAAGTTTGGCTAAAAGATAAGTTCACCCGAGTTGCTTCCATCAAAATGGCTGGTGGTAACACAAAAATTACATCATTAGCGTCAGACGCTGATGGAATGATGCTTTTTGTTGGTTCCTCTGATGGAAAGATCCAGGTCTGGGCATTGGACTAA 4467 0.3868 MSGNFRFMMDQKDIVRFLTTTIDSFIQDRLINKEQRTQHKDQCAERLAAEDGNTDKETEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNSYLSAWAHLNLSYLWKLRNNIKSCIYHSLEMFIVDPFFSRIDFAPELWKNLFLPHMSSIVGWYSEERHKLMMEVLPESTDFSYTADFDKVFNESLVFSMRPNQLEKLQKLEQLYGESLDENTRLYAKYYNDCMNPDSTSSKKVVPMLPIAEPPMTPLHELSRSVPDFVKFGPILPKSSGFSMTTRRSNDGLNETTRENIASNSNHSKGEQSSLWAAKESIIEEIEDDLDSEHYDASVDSDKINIFSPEPKKNIKDEDVEPKVYRSNQKNQMNSPNISPMESPRRASNYSSTNPLRRKKESKFLRLLSNRFTGSIVSDHSLSSSPDTSSDHIFTGDEEVMVRNNIKRKNDSQTPSMNQDNENSLVLNDSSHCESEDGYQSSSSFPKLEKLTIGSKPPKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLGTGNTTCPITRQALSANILPKTNYVLKRLIVSWKEQNPELAQEFSNSNTPRGSSCSPSAKDITMVSSIQRTTDSPSQKYKDDYIRQRNNRFTRVSVGASPTSVLSQAAVETIINSLTPYITSLCTSENLQDCEQAVLEIARLWKDSKTDPQIHSYLSKPTVVSGLVEILSASLNREVLRRSIYILSELIFSDERVGETLNSVDSDFDCLAMLLKNGLAEAALLIYQLRPVFAQLSEHELIPSLIQVIQNKSEDIDDFQLAIDPKAAAIAILEQILIGGDEYNRSVNASSVISANGIPAIVKYLDKTEGRRPVISILLCCMQAEKSCKSSIANRIELSPVLELFHAGNDSVRGICVEFLSELVRLNRRTSSNQTLQIIKDEGAFSTMHTFLVYLQMAPMEHQIAVASLLLQLDLLAEPRKMSIYREEAVETLIEALWQKDFSNNQMKALDALLFLIGHVTSSGKSYTEAGLLKIAGFDQPYNVLMKAEQLGHSDNDFMETMEDEKNAMKSWQKRVASVLCNHENGSIFQALEECLKSNSLKMAKSCLVLATWLTHMLFTLPDTGVRDVARKSLLEALMNVLQSSKNLEEKILASLALKSFISDPTVHEVLRVYAKSIYRILRKLKKYSTVAADILKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLHYLNGQVLSGHADGTIKVWDARKRIPRVIQETREHKKAVTSLCSSVDKLYSSSLDKTIRVWTIKPDGIKCIDVYDVKEAVYELAANAKLACYVTQGTGVKVFNWLDAPKFINFNKYVKCLAVSGDKLYCGCSGYSIQEVDLSKYTSTSFFTGTRKLLGKQTIHSLQIHDDLLFACGSSIDATAGKIFSLSSKMVVGSLSTGLDVHRVAINSDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGNTKITSLASDADGMMLFVGSSDGKIQVWALD* 1489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3305 1488 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1488 - -
Mtr1g3305 1488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 513 588 IPR013083 -
Mtr1g3305 1488 MobiDBLite consensus disorder prediction 352 381 - -
Mtr1g3305 1488 Pfam WD domain, G-beta repeat 1246 1276 IPR001680 GO:0005515
Mtr1g3305 1488 Pfam WD domain, G-beta repeat 1457 1485 IPR001680 GO:0005515
Mtr1g3305 1488 Pfam WD domain, G-beta repeat 1219 1235 IPR001680 GO:0005515
Mtr1g3305 1488 SMART WD40_4 1240 1277 IPR001680 GO:0005515
Mtr1g3305 1488 SMART WD40_4 1197 1235 IPR001680 GO:0005515
Mtr1g3305 1488 SMART WD40_4 1445 1486 IPR001680 GO:0005515
Mtr1g3305 1488 SUPERFAMILY RING/U-box 512 585 - -
Mtr1g3305 1488 MobiDBLite consensus disorder prediction 432 500 - -
Mtr1g3305 1488 ProSiteProfiles Trp-Asp (WD) repeats profile. 1454 1488 IPR001680 GO:0005515
Mtr1g3305 1488 MobiDBLite consensus disorder prediction 448 462 - -
Mtr1g3305 1488 SMART Ubox_2 516 580 IPR003613 GO:0004842|GO:0016567
Mtr1g3305 1488 MobiDBLite consensus disorder prediction 432 447 - -
Mtr1g3305 1488 Gene3D - 646 1020 IPR011989 -
Mtr1g3305 1488 MobiDBLite consensus disorder prediction 297 330 - -
Mtr1g3305 1488 Pfam U-box domain 514 584 IPR003613 GO:0004842|GO:0016567
Mtr1g3305 1488 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1488 - -
Mtr1g3305 1488 Gene3D - 1180 1488 IPR015943 GO:0005515
Mtr1g3305 1488 SUPERFAMILY ARM repeat 659 1018 IPR016024 -
Mtr1g3305 1488 MobiDBLite consensus disorder prediction 382 411 - -
Mtr1g3305 1488 CDD RING-Ubox_PUB 517 559 IPR045210 -
Mtr1g3305 1488 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1454 1488 - -
Mtr1g3305 1488 MobiDBLite consensus disorder prediction 463 500 - -
Mtr1g3305 1488 ProSiteProfiles Trp-Asp (WD) repeats profile. 1247 1279 IPR001680 GO:0005515
Mtr1g3305 1488 ProSiteProfiles Trp-Asp (WD) repeats profile. 1222 1235 IPR001680 GO:0005515
Mtr1g3305 1488 MobiDBLite consensus disorder prediction 351 414 - -
Mtr1g3305 1488 ProSiteProfiles U-box domain profile. 512 587 IPR003613 GO:0004842|GO:0016567
Mtr1g3305 1488 Coils Coil 1116 1136 - -
Mtr1g3305 1488 SUPERFAMILY WD40 repeat-like 1217 1487 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3305 Mtr-Chr1 44300121 44307987 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3305 503 910 U-box Gene Family AT1G23030 24.651 1.77e-18 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3305 - - gmx:100776142 2390.92