Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3302 ATGACAACATCAGAAGAAACTTCAAGTTTGACACAATTGAGTCAACATCTTTTAGAGGATGTATCAGACTCATTCTTTACCAATCTCAGTTGTGTAAAACTTGAAAACACATCATCACCAGAAATTGATTTGGATTCATACTTTTCAGAACATAACAGTTTTCTTGAAATCCTTGGTTTTGAAGCTGATACAAAATTGATTGACTTCACTTCTTCTCATAATAAGGTACAAAACTTGCATGAAGAAAGTCCCTTAGAGGAAACTCAAAAGACGACCAATTTGGCAGAATCAATGGTGTTAGAGAGGAAGGAACAAAGAAGTTATGGAACAAGGCATTACAGAGGAGTAAGGAGAAGGCCATGGGGAAAATATGCTGCAGAAATTCGTGATCCGACAAGGAAAGGAAGCAGGGTTTGGTTAGGAACATTTGACAGAGAGATTGATGCTGCTAAGGCTTATGATTGTGCAGCTTTCAGAATGAGGGGTCAGAAAGCCATATTGAATTTTCCTTTGGAAGCTGGTGAAGCTAATCCAAAGCCTAATAATTGTGGCAGGAAAAGGAGAATACATCAAAGATATGATGCTACAAGTTAA 594 0.3754 MTTSEETSSLTQLSQHLLEDVSDSFFTNLSCVKLENTSSPEIDLDSYFSEHNSFLEILGFEADTKLIDFTSSHNKVQNLHEESPLEETQKTTNLAESMVLERKEQRSYGTRHYRGVRRRPWGKYAAEIRDPTRKGSRVWLGTFDREIDAAKAYDCAAFRMRGQKAILNFPLEAGEANPKPNNCGRKRRIHQRYDATS* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3302 197 CDD AP2 112 170 IPR001471 GO:0003700|GO:0006355
Mtr1g3302 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 188 - -
Mtr1g3302 197 Pfam AP2 domain 112 162 IPR001471 GO:0003700|GO:0006355
Mtr1g3302 197 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Mtr1g3302 197 PRINTS Ethylene responsive element binding protein signature 152 172 IPR001471 GO:0003700|GO:0006355
Mtr1g3302 197 Gene3D AP2/ERF domain 111 172 IPR036955 GO:0003700|GO:0006355
Mtr1g3302 197 MobiDBLite consensus disorder prediction 175 197 - -
Mtr1g3302 197 ProSiteProfiles AP2/ERF domain profile. 112 170 IPR001471 GO:0003700|GO:0006355
Mtr1g3302 197 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 188 - -
Mtr1g3302 197 SUPERFAMILY DNA-binding domain 112 172 IPR016177 GO:0003677
Mtr1g3302 197 SMART rav1_2 112 176 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3302 Mtr-Chr1 44280942 44282152 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3302 1 188 AP2-EREBP Transcription Factor Family AT5G07580 44.118 4.47e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr1g3302 AP2 3.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3302 - - gmx:100499732 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3302 1 44280942 44282152 Mtr1g3302 1 44280942 44282152 ECH