Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3295 ATGGAAGATACATTTCCCAAGATGGAAATCTTTACACAAAAGGAATTACCAACTTGTTTTCAAGAAATAGCAACAACAGAATCCAAGTATTTGGAGGATACAATTATAAGAAGAGGCTCTTACTCTCTCACTTCCTCATCAACATCATCACCACAAAAGCTTTTCTGGTGTACTTCAAATTCTACTTCAATGAAACAAGAGGTACCTTTAACCACTTTAGTTAATCAAATACCTGCAAAGTTCAATGATCATCATGATGACATGAAGAATATGAAAGCTATAAACCAATCCATTTCTGAATTCAATTCTATTTCCAATCCTAATGTCTTAGCCTCAGATATAAAACATAGTTTTGTTCCTCTAAATCTTTTGGAAACTCTCCCGGCTTTAACCGTAGCTCCGATGTCTGATGAGCCTGCAGTATCTTTAGCTTCTTCTACTTGCGCTACACCGAAATCTCCAAACTTGACTTTGTTTTTGCAGGAACCATCCATGCTATACTCATCAACTTCAAATATCAAAAGTAGTGAAATCATGTCAACATCTTCAAATCCCACATATCCTATGTCTCAATTTGGCCTAACTCAGCATCATCAACAAAGTGCTTATGAATTTTATGATTCAAACAAAATGGACAGGAATATGATAACAAATCTACAATCCAAGTCTTTCAATGAGAATTGGTTGAGTGCCACAAAGACTCAACCTATGAAGTATGGTACAAGAGGGAAGCTTTTTAAAGGGGTGAGGCAGAGACATTGGGGAAAATGGGTTGCTGAAATTAGGCTACCAAGAAACAGGACTAGGGTCTGGTTAGGGACATTTGAAACAGCTGAAGATGCTGCAATTGCATATGATACAGCAGCATATATACTAAGAGGAGAATGTGCTCAGTTAAATTTTCCAAATCTAAAGCATGTGATTCAAGCCAATTCATTGAATGGAACCACTGCTTCCCTTGTTGAGGCAAAACTGCAAGCAATATCACAAGGAGTTTCTTCTTCTCATAGAAAGCAAGGTGATTCATCAGCAAGGTTAAACAATAGGCACATTGATGAGATTAAAAATGGAAAGGATGAAAGTATAAAGGAGTTGAAGGTTGTAGGTGACATAACTGAGAGAAGCAAAAGTACACAGAATGAGATATGTGATGTCGAAACTGTTCAGTTAAGTAGAATGCCATCTTTAGATATGGATATCATTTGGAATGAACTTCTAGTTTCTGATTCATGA 1233 0.3658 MEDTFPKMEIFTQKELPTCFQEIATTESKYLEDTIIRRGSYSLTSSSTSSPQKLFWCTSNSTSMKQEVPLTTLVNQIPAKFNDHHDDMKNMKAINQSISEFNSISNPNVLASDIKHSFVPLNLLETLPALTVAPMSDEPAVSLASSTCATPKSPNLTLFLQEPSMLYSSTSNIKSSEIMSTSSNPTYPMSQFGLTQHHQQSAYEFYDSNKMDRNMITNLQSKSFNENWLSATKTQPMKYGTRGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFETAEDAAIAYDTAAYILRGECAQLNFPNLKHVIQANSLNGTTASLVEAKLQAISQGVSSSHRKQGDSSARLNNRHIDEIKNGKDESIKELKVVGDITERSKSTQNEICDVETVQLSRMPSLDMDIIWNELLVSDS* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3295 410 CDD AP2 244 304 IPR001471 GO:0003700|GO:0006355
Mtr1g3295 410 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF062 9 409 - -
Mtr1g3295 410 ProSiteProfiles AP2/ERF domain profile. 245 302 IPR001471 GO:0003700|GO:0006355
Mtr1g3295 410 PRINTS Ethylene responsive element binding protein signature 246 257 IPR001471 GO:0003700|GO:0006355
Mtr1g3295 410 PRINTS Ethylene responsive element binding protein signature 268 284 IPR001471 GO:0003700|GO:0006355
Mtr1g3295 410 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 9 409 - -
Mtr1g3295 410 SUPERFAMILY DNA-binding domain 245 302 IPR016177 GO:0003677
Mtr1g3295 410 SMART rav1_2 245 308 IPR001471 GO:0003700|GO:0006355
Mtr1g3295 410 Pfam AP2 domain 246 294 IPR001471 GO:0003700|GO:0006355
Mtr1g3295 410 Gene3D AP2/ERF domain 245 303 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3295 Mtr-Chr1 44231616 44233196 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3295 1 405 AP2-EREBP Transcription Factor Family AT4G13620 38.534 4.87e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr1g3295 AP2 1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3295 - - mtr:MTR_1g090170 491.886