Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3289 ATGTCTTCGTCGGTTCAACAAGTTGTTAAGCGTGCCAAATACAAATCCACCGTGAAAGATCCTGGCACTCCTGGTGTAATCAAATTGACTCGACAGAAAGTTGTTTTCAAGCCTAATGATCCAACATCAAACAACAAGCTTGACGTTGATTTCAGATTAATCAAAAGTCAAAAAAACACCAAAGAGGGGTCAACCAAACCACCGTGGCTTAACCTTGTACATTCTCAGGGCAGTTACATCTTCGAGTTTGAAAGCTTTTCAGATCTTCATGTTTGCCGGGAATTCGCAGCTGGTATTATTAGCAAGCCTGTAGAAGCCCCAAAAGTTGTTTCCGATGAACAGCTTAGCACTGCCGAAATGACACTGAGGATGAAGCTATTAGGAGAAGATAGTAAATTGAAGAAGATTCATATGGAACTTGTGATGAGTGATAAGCTTACAGAATCAGAATTTTGGGCTACAAAGAAGAAATTGCTTGACCAAGATGAAAGCCGAAAGTTAAAACAAAGGATTGGATTTAAAAATTCTTTGATCTTCGACACAAAGCCTACTAGTGATGGTCGGATAAATCAGGTTAAATTTCAATTGACTCCAGAGATAAAATATCAGATTTTTGCCCTCAAACCAGCAGTTCACCAGGCATTCCTCAATTTTGTACCCAGTAAGATGAGCGAGGTAGATTTCTGGAACAAATACTTTAAAGCTGAATATCTCCATAGTACCAAAAATGCTATTGCAGCAGCTGCCGAGGCTGCTGAAGATGAAGATCTTGCTGTTTTTTTGAAAGATGACGAGATATTAGAAAATGAAGCTCGAAAGAAGGTTCGACGGGTCGATCCAACTCTAGACATGGAAGCAGACCAAGGAGATGATTACACTCATCTTCCTGATCATGGGATTTTCCGTGATGGTAGCAAGGAAACATCTGAAGCTCAAAATACTCTGTATCGGAGAACGTTGTTGCAAGATCTCAACAGACAAAGTGAGGTGGTTCTTGAAGGAAAAACTTTAGATATAGATATGGAACATCCAAGAACAGCGGTAGAAGCGCTTGCTCGGAGAAAACATGAATCTGATGGAGTTGTAGAGGAGAGGCGAAACAGAATTTCTAAGATGGCCCAGATTGAAGATCTTCAGGCACAAGATGATCATCCATTTGCACCACTCTGTATCAAGGATCCTCGTGACTATTTTGATTCCCAACAAGCTAATGCGGTAAAAACCTTGGATGATTCCCTATCCGGTAAGGAGAAAATAAGATGCAATTTGGGTTCTGAGGAAGCCTATGGCTCTTTGAGGGAGTCCATATCTAACATCAAAACTATGGGATTAAGGGATCCTCTATTGAGTCATGAGGTTGCTTTTAAGGTCCTTTCTGAATTGACTAAAAACATCTCAAGCACCAAATCAAATCTTGGGAAAAGTTCGCAGGAGAGTGTCCTTGATATATTACCCAACACAACTAAGGAGAAACTACTAGATCATTGGGTTTGCAGTCAGGAATTACTGAGGCACTTTTGGTCTTCTTATCCAGTAACAAAACAAAGTCTTGTTGATAAGGCTAGAAGACTGAAAGACGCCATATCACAAATATATTCTAAACTCGAGGAAATAAAGGTATCTGCAAAGTCAGACCTACGGCACCAGGTTTCCCTTGTTGTCCATCCAATGCAGCAGGCTCTGGATGCTGCTTTGTTACATTACGATGCTGACATTACGAGAAGAAATGCTAAAGGGTCGAAGCGTAATGGTTATGTTTAG 1761 0.4055 MSSSVQQVVKRAKYKSTVKDPGTPGVIKLTRQKVVFKPNDPTSNNKLDVDFRLIKSQKNTKEGSTKPPWLNLVHSQGSYIFEFESFSDLHVCREFAAGIISKPVEAPKVVSDEQLSTAEMTLRMKLLGEDSKLKKIHMELVMSDKLTESEFWATKKKLLDQDESRKLKQRIGFKNSLIFDTKPTSDGRINQVKFQLTPEIKYQIFALKPAVHQAFLNFVPSKMSEVDFWNKYFKAEYLHSTKNAIAAAAEAAEDEDLAVFLKDDEILENEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKETSEAQNTLYRRTLLQDLNRQSEVVLEGKTLDIDMEHPRTAVEALARRKHESDGVVEERRNRISKMAQIEDLQAQDDHPFAPLCIKDPRDYFDSQQANAVKTLDDSLSGKEKIRCNLGSEEAYGSLRESISNIKTMGLRDPLLSHEVAFKVLSELTKNISSTKSNLGKSSQESVLDILPNTTKEKLLDHWVCSQELLRHFWSSYPVTKQSLVDKARRLKDAISQIYSKLEEIKVSAKSDLRHQVSLVVHPMQQALDAALLHYDADITRRNAKGSKRNGYV* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3289 586 ProSiteProfiles BSD domain profile. 188 240 IPR005607 -
Mtr1g3289 586 SUPERFAMILY BSD domain-like 188 242 IPR035925 -
Mtr1g3289 586 SUPERFAMILY BSD domain-like 113 158 IPR035925 -
Mtr1g3289 586 Gene3D - 117 163 - -
Mtr1g3289 586 SUPERFAMILY PH domain-like 8 102 - -
Mtr1g3289 586 ProSiteProfiles BSD domain profile. 105 163 IPR005607 -
Mtr1g3289 586 MobiDBLite consensus disorder prediction 285 305 - -
Mtr1g3289 586 MobiDBLite consensus disorder prediction 285 308 - -
Mtr1g3289 586 Pfam BSD domain 190 243 IPR005607 -
Mtr1g3289 586 PANTHER TRANSCRIPTION INITIATION FACTOR IIH-RELATED 5 576 IPR027079 GO:0000439|GO:0006289|GO:0006351
Mtr1g3289 586 SMART wurzfinal6 109 163 IPR005607 -
Mtr1g3289 586 SMART wurzfinal6 188 240 IPR005607 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3289 Mtr-Chr1 44181959 44194805 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BSD Mtr1g3289 BSD 9.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3289 K03141 - gmx:100776016 926.391