Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3280 ATGGAGCCTTTCCTTGTTTTTGGCGGCATTACTTGCTTCGCTGCTGCTGCTGCTTACGTTTCCGCCAGAACCAGTGACAAGGATGCAGAAATTCTTAAATCTGTTACCCGGGTCAATCAGCTGAAGGACCTAGCACAACTGTTGGATGCAGAAAAATTACCTATGGTTGTTTCAATTTCTGGCGAAGTTGCTTTTGAAACCCCAATCAAGTGCAAGATTAGCGGTTTAAGTGGTGTAATAGTTGACGAAAGTGTAGAGGAACATTATCTTAAAAAGGTTGAGCGAAAAGAGAAATGCGAGTGTGCTATTGAGCACAAAAAGACATGCAGTTATGCTGATTCCTTTTTTGACAAGAATGATGTTTTTTCATGGACACAGCATTCTAGGCTCATATCATCAATTCCAAAAGAGGTTCCATGGTACCTGGATGACGGGACTGATCGTGTGCATGTGGTGCCACTGATTTTGTATTACCTGCTGAAGGATCAAAATTTGAGCCGTCTGAAATATCGAGCTATCTCGAAGATGAAAAGATCCTTGGACTCAAGAGAATTGAACGGGTACTTCTGGTTGGAACTTCCTGCCTCTAAAGATGATGATGGGACCGTTCGAATTCAACGACCTCTTAAAGGGCCATTTTATGTCTCTGGCAAAACGATTGATGAAAACATTGCAAATTTCGTGGATTATGCAAGGTATTGTAAGGATAATTCTGTGGCCCTGACAATGATTGGTGCTTGTTTACTAGCCGCATCCACTGTTATTATCTTGGAAGGCGGCGTTGCACTGAAATGTGAAAAAGCTGAACCAAAAAGACTAGGAGCTAGGATTTCAAATCTTGCTGTAAATTCCAAGTTGAATAGTTTAGAACGATTAACTTGCATTACACAAGAGATTATTCTTGTTGTTAAGGTGGTTTTGATGGATTTATTTTTTGCGGGAGGCGTTTCTTACTGTTTGGCTGCTGCTGCTGTTAACTTTTTCAACAGAGACAATGTCAGGCATGTGGAAACTCTTGAATCCATTCCCCGGTTCAATGAGCTGAAGGAGTTAGAACAACTACTGGATGTTGAAAGGTTACCATTGCTTGTTGCAATTTCTGGCAACGTTGTTTCTGAAACCCCAATTAAGTGCGAGATAACTGGTTTAAGAGGTGTAATAGTTGAAGAAAGAGAAGAGCGACATTATCTTCAACGGGATATTTCTATTGGACAATGCAAGGATGCTGCTACACAAACACAGAATGGAAAAATAGATATTTACTGGAAAAACCATAGTTCGTTATTATCATCCAATCGTAAAGAGGTTCCTTGGTATCTGGATGATGGGACTGGTCGTGTGCTTGTGGTTGGAGCTCGTGGTGGCACTGATTTTGTATTACCTGCTGGAACCTCAACATTTGAAAAGTTGGAGCAGACACAAATAAATGAAACATCGGATCATATTCAACTTATAAAGGTCAAGGGATTGAAGAGGATTGAACGAGTACTTCCGGTTGGAACTGCTTTAACTGTTGTTGGTCAGGCCTCTAAAGATGATGACGGGACCATTCGAATTCAGCGACCTCCCAAAGGGCCATTTTATGTCTCTAGCAAAGCGATTGATGAACACGCTGCAAAATTTGTGAATTATGCTAGGTCGTGTGAGTATACTTCTACGGGCCTGATAGTGCTTGGTGCTTTTCAAATAGCTGCCCGCATCTACTATTTGTTACATCGTAGAAGACGTTGCAGTGAACTGTGA 1743 0.4137 MEPFLVFGGITCFAAAAAYVSARTSDKDAEILKSVTRVNQLKDLAQLLDAEKLPMVVSISGEVAFETPIKCKISGLSGVIVDESVEEHYLKKVERKEKCECAIEHKKTCSYADSFFDKNDVFSWTQHSRLISSIPKEVPWYLDDGTDRVHVVPLILYYLLKDQNLSRLKYRAISKMKRSLDSRELNGYFWLELPASKDDDGTVRIQRPLKGPFYVSGKTIDENIANFVDYARYCKDNSVALTMIGACLLAASTVIILEGGVALKCEKAEPKRLGARISNLAVNSKLNSLERLTCITQEIILVVKVVLMDLFFAGGVSYCLAAAAVNFFNRDNVRHVETLESIPRFNELKELEQLLDVERLPLLVAISGNVVSETPIKCEITGLRGVIVEEREERHYLQRDISIGQCKDAATQTQNGKIDIYWKNHSSLLSSNRKEVPWYLDDGTGRVLVVGARGGTDFVLPAGTSTFEKLEQTQINETSDHIQLIKVKGLKRIERVLPVGTALTVVGQASKDDDGTIRIQRPPKGPFYVSSKAIDEHAAKFVNYARSCEYTSTGLIVLGAFQIAARIYYLLHRRRRCSEL* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3280 580 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SP1-RELATED 4 177 - -
Mtr1g3280 580 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SP1-RELATED 312 579 - -
Mtr1g3280 580 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SP1-RELATED 195 299 - -
Mtr1g3280 580 PANTHER - 4 177 IPR044231 GO:0004842|GO:0016567
Mtr1g3280 580 PANTHER - 312 579 IPR044231 GO:0004842|GO:0016567
Mtr1g3280 580 PANTHER - 195 299 IPR044231 GO:0004842|GO:0016567
Mtr1g3280 580 Pfam E3 Ubiquitin ligase 413 559 IPR022170 GO:0004842|GO:0006996|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3280 Mtr-Chr1 44119207 44129572 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3280 314 567 C3H Transcription Factor Family AT1G63900 47.266 9.43e-74 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3280 K15688 - gmx:100803252 258.07