Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3279 ATGGATGCAAATATATTACCCAGGGTTGTTACAATTTCTGGCAGAGTTGTTTGTGAAGCCCCAATTACGGGCGAGTTGAGTGGTTTAGGAGGTGCAATAGTCGAAGAACGAGTAGAGGAACATCATCTTAAACGAGATGTTGAAATTAAGGGAAAAAAGGAAAGCAAGGGTTCTGTTGAGCCTGTTACAAAGAAATGCGGTGAGGCTGATTCTTGGACACCGGGTTATGAGTTAAAATCAGTCAATCATAAAGAGGCTCTTTGGTATCTGGATGATGGGACCGGTCGTGCGCTTGTGGTTAGAGCTTGGGGTGGTACTGGTTTTGAATTACCTGTTGGAAGCTCAACATTTGAAAATTCGACGGAGACACGTTTTCATGAAAAATCAGATCGGATACCTTTTCATGAAAAATCGGAGCACTTCCAACTTATAAAGATTCTTGGCTTCAAGAGGATTGAACGGGTACTTCCGGTTGGAACTTCCTTAACTGTTGTTGGTCAGCCTGTCAGAGATTCTGCTGGAGCCATTCGAATTCAGCGACCTCACAATGGGCCATTTTATGTGTCTCAACAAACGATTGATGAACACATTGAAAATCTCAAGAGTGTTGCAAGGTGGTGCCAGTGTGTTTCTGTGGGCCTGACAGTCTTTGGTGTTTCGCTAATAGCCAATGCTCTTTCGCACACCTCAGAAGACAGTGTTGCAGTAAACTGTGGAAAAGGTACCATTCACTAG 735 0.4367 MDANILPRVVTISGRVVCEAPITGELSGLGGAIVEERVEEHHLKRDVEIKGKKESKGSVEPVTKKCGEADSWTPGYELKSVNHKEALWYLDDGTGRALVVRAWGGTGFELPVGSSTFENSTETRFHEKSDRIPFHEKSEHFQLIKILGFKRIERVLPVGTSLTVVGQPVRDSAGAIRIQRPHNGPFYVSQQTIDEHIENLKSVARWCQCVSVGLTVFGVSLIANALSHTSEDSVAVNCGKGTIH* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3279 244 Pfam E3 Ubiquitin ligase 69 218 IPR022170 GO:0004842|GO:0006996|GO:0016567
Mtr1g3279 244 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SP1-RELATED 3 231 - -
Mtr1g3279 244 PANTHER - 3 231 IPR044231 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3279 Mtr-Chr1 44106167 44108903 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3279 1 224 C3H Transcription Factor Family AT1G63900 41.964 1.49e-48 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3279 K15688 - gmx:100803252 189.889