Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3278 ATGGAGCTGGCTCTTATGGGAGGCGTCGTTTTCTGTTCAGCTGCTGCTGTTCTTTACACTTGCAGCAAATACAATCACAGGAATGCAGAAATTCTTAAATCTGTTACCCAGGTCAATAAGTTGATGGACATAGAACAATTGCTGGATGGAGAAAGATCACACTTGGTTGTTGCAATTTCTGGGTGTGTTGTTTCTGAAACCCCAATTAAGTGCGAGTTGACTGGTTTAAGAGGTGTTGTAGTTGAAGAAACAGTAGTGCAACATTATCTAAGAGAGTGTGATGCTAATAAGCTAATAATGAAATGTAATGACAATGGCTCTTGGCTGCAAAATTCTCCGTTGACATTGTACACTCGCAATGAGGTTCCTTGGTATCTGGATGATGGGACCGGTCGCGTGCTTGTGGTTGGAAGCGAGACGTTTGAAGATTCGGGTTGGGCACGTGCATGTAAAACATTGAATCATCTCCAAGGTGTAAAGGTGGGAGTGTCAGCTCCATTGTCTGCTTCGGTCTCTGTGGTAGGACTTAAGAGAATTGAATGGGCACTTCCGTTTGGAACTTCCTTGACTGTTGTTGGTGAGGCCTCTAGAGATGGTGACGGGACTGTTCGAATTCAGAGACCTCCCAAAGGACCATTTTATGTTTCCCGCAAAACGATTGATGAACAGATTGCAGATCTTACATATTTCGCGAGGAGGTTTAAGTATGCTTCTGTGGGACTCACGCTGTTTGGTGCTTGGCTAATAGCCGAATTTGCTATTTGGTGCATCACGAAAGACGGTGATGCTGTGAGCTGTGAAAAAGTGGAAATTGCTCCGGTGGACTTTTCTGAAGGCGTTGGTAGCCAACAAGTTGACTCTTCATAG 867 0.4452 MELALMGGVVFCSAAAVLYTCSKYNHRNAEILKSVTQVNKLMDIEQLLDGERSHLVVAISGCVVSETPIKCELTGLRGVVVEETVVQHYLRECDANKLIMKCNDNGSWLQNSPLTLYTRNEVPWYLDDGTGRVLVVGSETFEDSGWARACKTLNHLQGVKVGVSAPLSASVSVVGLKRIEWALPFGTSLTVVGEASRDGDGTVRIQRPPKGPFYVSRKTIDEQIADLTYFARRFKYASVGLTLFGAWLIAEFAIWCITKDGDAVSCEKVEIAPVDFSEGVGSQQVDSS* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3278 288 Pfam E3 Ubiquitin ligase 107 248 IPR022170 GO:0004842|GO:0006996|GO:0016567
Mtr1g3278 288 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SP1-RELATED 5 268 - -
Mtr1g3278 288 PANTHER - 5 268 IPR044231 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3278 Mtr-Chr1 44098963 44103557 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3278 7 254 C3H Transcription Factor Family AT1G63900 46.183 3.13e-71 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3278 K15688 - gmx:100803252 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3278 1 44098963 44103557 Mtr1g3278 1 44098963 44103557 ECH