Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3277 ATGGCGATGGTTCCATGGCGTGGCGTCGGTTGTTGTTTGAGTGCTGCTGCTCTTTACCTTCTCGGTAGAACCAGTGGCAGGGATGTTGATATTCTTAAATCTGTTAACCGGGTTAATCAGCTGAGGGAGCTAGCACAACTGTTGGATGAAGAAATATTTCCCTTGGTTGTTGCAATTTCTGGAAGAGTGGGTTCTGAAACTCCAATTAGCTGCGAGTTCAGTGGTTTAAGAGGTGTTATAATTGAAGAAACAGCAGAGCAACATTTTCTCAAACACAGTGATGCTGGTTCCTGGATACAAGATTCTGCGTTAATGCAATCCAGGAGTAACGAAGTTCCTTGGTATCTGGATGATGGAACTGGTCGTGTACGTGTAGTTGGAGCTCAGGGTGCTACTGGTTTTGTATTGCCTGTTGGAAGTGAGGCATTTGAAGAGTCAGGTCGGTTACCTGTACGCGGAACATCGGATTATGTACAAGGTCTAAAGATGCTTGGAGTTAAAAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGGCTGCTAAAGACGATGTCGGAACCATTCGAATTCAGCGACCCTCCAAAGGGCCATTTTATGTCTCTCCCAAAACAATTGACGAACTCATTGCAAATATTGGGAGATGGGCGAGGTGGTATAAGTACGCCTCTGCGGGCTTGACAGTGTTGAGTGTTTATATGATAGCCAATCATGCTGTTCGATACATCTTGGAAAGACGACGTCGCAACGAATTGGAAAAAAGGGTTCTCGCTGCAGCTGCTAAGATATCTGGACAAGATAATGGAGGTGAAATGGATGACAGTTTATCAGATGGTGCTAAAAGGGAACGTGCAATGCCAAATTTGTGTGTAATATGCCTCGAGCAGGAATATAATTCTGTTTTTGTTCCGTGTGGGCATATGTGCTGCTGTACAGCTTGCTCTTCGCACTTGACCAGTTGTCCTCTTTGCCGGAGACAGATAGAGAAGGCGGTAAAGACTTTCCGTCATTGA 1026 0.4513 MAMVPWRGVGCCLSAAALYLLGRTSGRDVDILKSVNRVNQLRELAQLLDEEIFPLVVAISGRVGSETPISCEFSGLRGVIIEETAEQHFLKHSDAGSWIQDSALMQSRSNEVPWYLDDGTGRVRVVGAQGATGFVLPVGSEAFEESGRLPVRGTSDYVQGLKMLGVKRIERVLPVGTSLTVVGEAAKDDVGTIRIQRPSKGPFYVSPKTIDELIANIGRWARWYKYASAGLTVLSVYMIANHAVRYILERRRRNELEKRVLAAAAKISGQDNGGEMDDSLSDGAKRERAMPNLCVICLEQEYNSVFVPCGHMCCCTACSSHLTSCPLCRRQIEKAVKTFRH* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3277 341 PANTHER - 3 308 IPR044231 GO:0004842|GO:0016567
Mtr1g3277 341 Pfam E3 Ubiquitin ligase 89 236 IPR022170 GO:0004842|GO:0006996|GO:0016567
Mtr1g3277 341 Pfam Zinc finger, C3HC4 type (RING finger) 292 334 - -
Mtr1g3277 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 340 IPR013083 -
Mtr1g3277 341 SUPERFAMILY RING/U-box 293 335 - -
Mtr1g3277 341 CDD RING-HC_LRSAM1 293 332 - -
Mtr1g3277 341 ProSiteProfiles Zinc finger RING-type profile. 294 329 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3277 Mtr-Chr1 44091126 44095956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3277 3 266 C3H Transcription Factor Family AT1G63900 70.677 2.92e-138 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3277 K15688 - gmx:100803252 567.385