Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3275 ATGGAAGAAATAGTTGCATCTTGTGACAAAGTTGAAAAAAGTGAAGCAAGTAAAAGAAGTGATGATAAATTTTCAGCTGCTATTGTTGTTAGTGAAGATGAAGAACCTAGAACTGGGATGACATTTAGGTCTGAAGAAGAAGTTATTAGGTATTACATGAATTACGCTAATCGTGTAGGTTTTGGAGTTACAAAAATAAGTTCAAAAAATGCAGATGATGGAAAGAAGTATTTTACTCTAGCATGTAATTGTGCAAGAAGGTATGTGAGTACTTCGAAGAATCCTTCGAAGCAATATCTTACCTCGAAAACACAGTGTAGGGCTAGGTTGAATGCTTGTGTAGCTTTAGATGGATCGAGTACCATTTCAAGAATTGTTCTTGAACATAATCATGAACTTGGTCAAACCAAAGGCCGGTATTTTAGATTGGATGAGAGTTCGGGGACTCATGTAGAGAGGAATTTAGAACTTAATGATCAAGGTGGGATTAATGTTGATAGAAATCTTCAATCCGTGGGTCTTGAGATGAATGGGTGTGGAAATCTTACTTCTGGAGAAAATGATTGTAGAAATTTTGTGCAGAAAGTAAGACGGCTAAGACTTGGGAGAGGAGATGTTGATGCAATTCATAGCTTTTTTCATAGAATGCAAAAGCAAAATAGTCAATTTTATTGTGCAATGGATATGGATGATAAAAGGAATATACAAAATTTATTTTGGGCAGATGCGAGATGTAGGGCTGCATATGAATATTTTGGTGAAGTCATAACTTTGGATACCACTTATTTAACAAGTAAGTATGACTTGCCATTGGTCCCCTTTGTTGGAGTGAACCATCATGGTCAGACTATTTTATTGGGGTGTGCAATATTGTCGAACCTGGATGCTAAAACTCTTACCTGGTTGTTCACAAGATGGTTAGAATGTATGCACGGACATGCTCCAAATGGCATAATTACTGAAGAGGATAAAGCAATGAAAAATGCAATTGAGGTTGCCTTTCCTAAAGCTCGTCATCGATGGTGCTTGTGGCATATAATGAAGAAGGTTCCAGAAATGTTGGGTAAATACTCCCGTAATGAGTCTATCAAAACACTTTTGCAGGATGTGGTATATGACTCTATGAGCAAAAGTGATTTCATGGAGAGGTGGGGAAATATGATAGAACATTATAATCTACATGATAATGAATGGTTAAAATGGTTATTTGATGAGCGGCACCGTTGGGTTCCTGTGTATGTGAAAGACACATTTTGGGCTGGAATGTCGACTGCACAACGGAATGAAAGTATAAACTCATTTTTTGATGGGTATGTTAACTCAAAGACAACATTGAAGCGATTTGTTGAACAGTATGACGATGCATTGAATGATAAAATCGAAAAGGAAAGCATGGCTGATTTTGATTCATTTAACTCAACAATTGCTTGTGTGAGTCATTTTGGCTTTGAAGTCCATTTCCAGAAAGCATTTACCATTGCCAAATTCAAAGAATTTCAAGTAGAGGTCTTTTCTATGATATATTGTAATACTAGCTTTGAAAGATTGGAGGACTTGAATTCTATATTCTCTGTTACTGAAAATAAGAAAGTAAAAGAGAAAGTTAAAGACGTGGTGTTTAAGGTATCTTTCAATGAAAAGGACTTCAATTTGCAGTGCACGTGCTGCTTATTTGAGTTTAAAGGAATTTTATGCAGACACATTCTTTGTGTGCTTAAGCTCATTGGCAAAACAGATTCAATGCCCTCTTTTTATATTTTGCCACGGTGGAGGAAGTATGTAAAGCGGAGATATACATTGATTAAACATGGTTTTGAAGAATTGCAACGTGTTAATATGGCCTGTGATGCCTTTTATGAAGTTGCTTCTACTATGATAAATTCTGAAGATAATTTACAGAAAGTGATGAATAGGATCAAGGACTTGAAAACCGCGTTATCTTCTAAAGAGCCATCCTCCAGGATTACACAAGAACATACTTCAGTTCCAAACCCCGTGACTAGGATTGTTGATCCAGCAGTAACTCACAGTAATGGGTATCCTCTTTCAAAAAGGAAGACATCTAACGTTGATCAAATTTTAAAGAAGAAGCTTGCAAGACACAAAACTCCAAAGAACAACCAGGAAAATAAAAACGATCAAAGTCAAGAAGAGGGCTTATTGTGTACACCTATTCTTCAAGAAACTGATGATGAAGAACATCTTAGTGATGTAAACCAGGTTCCATATTGTCCTCAAATCATAAACCAGAATATTTCCTGTTCTGAACTTTTACAGGCACAACACCATAAGAATGATCAACCATCCTCATAA 2313 0.3623 MEEIVASCDKVEKSEASKRSDDKFSAAIVVSEDEEPRTGMTFRSEEEVIRYYMNYANRVGFGVTKISSKNADDGKKYFTLACNCARRYVSTSKNPSKQYLTSKTQCRARLNACVALDGSSTISRIVLEHNHELGQTKGRYFRLDESSGTHVERNLELNDQGGINVDRNLQSVGLEMNGCGNLTSGENDCRNFVQKVRRLRLGRGDVDAIHSFFHRMQKQNSQFYCAMDMDDKRNIQNLFWADARCRAAYEYFGEVITLDTTYLTSKYDLPLVPFVGVNHHGQTILLGCAILSNLDAKTLTWLFTRWLECMHGHAPNGIITEEDKAMKNAIEVAFPKARHRWCLWHIMKKVPEMLGKYSRNESIKTLLQDVVYDSMSKSDFMERWGNMIEHYNLHDNEWLKWLFDERHRWVPVYVKDTFWAGMSTAQRNESINSFFDGYVNSKTTLKRFVEQYDDALNDKIEKESMADFDSFNSTIACVSHFGFEVHFQKAFTIAKFKEFQVEVFSMIYCNTSFERLEDLNSIFSVTENKKVKEKVKDVVFKVSFNEKDFNLQCTCCLFEFKGILCRHILCVLKLIGKTDSMPSFYILPRWRKYVKRRYTLIKHGFEELQRVNMACDAFYEVASTMINSEDNLQKVMNRIKDLKTALSSKEPSSRITQEHTSVPNPVTRIVDPAVTHSNGYPLSKRKTSNVDQILKKKLARHKTPKNNQENKNDQSQEEGLLCTPILQETDDEEHLSDVNQVPYCPQIINQNISCSELLQAQHHKNDQPSS* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3275 770 MobiDBLite consensus disorder prediction 698 718 - -
Mtr1g3275 770 MobiDBLite consensus disorder prediction 698 712 - -
Mtr1g3275 770 Pfam MULE transposase domain 255 349 IPR018289 -
Mtr1g3275 770 MobiDBLite consensus disorder prediction 646 664 - -
Mtr1g3275 770 SMART 26again6 551 578 IPR006564 GO:0008270
Mtr1g3275 770 MobiDBLite consensus disorder prediction 645 664 - -
Mtr1g3275 770 Coils Coil 625 645 - -
Mtr1g3275 770 ProSiteProfiles Zinc finger SWIM-type profile. 540 576 IPR007527 GO:0008270
Mtr1g3275 770 Pfam SWIM zinc finger 548 572 IPR007527 GO:0008270
Mtr1g3275 770 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 12 648 IPR031052 GO:0006355
Mtr1g3275 770 Pfam FAR1 DNA-binding domain 50 133 IPR004330 -
Mtr1g3275 770 PANTHER OS03G0843700 PROTEIN 12 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3275 Mtr-Chr1 44084380 44087754 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr1g3275 MULE 2.9e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3275 - - cam:101506732 1198.34