Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3268 ATGTGTCAGTGTCGGACACTTGACACATGTCTGATACCTGAAACGTCTTTGATTAGGAGTGTCGGTGCTACAGAGATGGAGGTGATAGACAAGGGTATTATAATGGCTGAAGAAATGGATAAAACTGTTGGTTCTGAACAAGGTTGTAATTACAAGAGAAAATTAGATGACGAGTCTTCTTCAATGGTTACTGAAGATGGTTCCTTAAGTGTGGAGGATGATTTCCCTCCCTATGAATTTACAAATGCGCAAAGCTTCGATTCAACAGAATTAGGGTTAGGTTGTTGTACAGAAGAACAACAGTTGGGTGTGCTCGAGGTTGAAGATTGGAAGGATCCTATGGCAACTCAGCTTGAGGACTTACTGATGAGTAATTTGGAAGCAATTTTTAGTAATGCTATCAAGAAGGTTGTTGATTTAGGAGGCTACAGTCAAGAAATGGCTGAAATGGCCGTTTCAAGGAAGTCCTTGTACACAGAAGGAGACCCTCTCACAAATATTGTTTACAACACACTGAATACTTTGAAGGGGAAAGGTACTGAAACTCCTGCAGACTTTGTATTTCAAAATACAAAGCAGTTACTGCATTATAGTTTGGTAGAGATGCTCAGTGTACTTCGGGAACTAAAACCCTCCTTAACAGTAACTGAAGCAATGTGGGAGTTACTGGTACATGACTTGAGTATTACACGAGTCATTGCACCAGAAGGTCAACTGAGTGGTGGTGATTCTAGCGAGCAAAGCTCTGACAAGTCTTCTACTGCCCCATCAAAGTTAAATGTTCAGTCTGATATGATTGGAAGTATGAGTGTGACAACTTTCACAAATATCTCCCAGGAAAGTAAATCAGAATCTAATTCTCAGCTGATGAAGAGCAGAAAACACCATAAAGAGTTTACATCAGTGCTTAGGGAGAAGTTCTTTCATATGAAAGAACCTAAAGCTTGTGGCAAAGCAGGTGTTAAATTAGGAAAGCTTACAAGCGTAAGTGGTTTGATTGTTGAAAAAAAACTCAAGCCACCATCTGAAGTTCCAAATCAGAAAATGAAACGTGGCTCCTCAAATACAAAAGGAGTTAGTATAGCAGGAGTATGCCGTATTTCAACCAATGATGATTCAGCTTTACCCGAAGGAGGTAGCGCTGTAAAATTACCCACAAAGGATGCAACATCTACTTCTCCAACAGTGAAAACAGCCAAACCAAAACCTAAGCCATTCTCCTCTGCCGCTCAAAAGGTTCAAAATTACTGTGCTGCTATTCCTTTTGATGAGGCTTCGGGCAAGTTTGTCCCACGGGATGAGAAGGACGAACAAGTTTTGAAATTAGTATCACGAGCACAAGAATTGCAGGATGAGGTGCAAAGCTGGAATGACTGGGCCAATAAGAAGGTTATGCAGGTAGCAGATAAGCTTCGCAAGCTTCAGGTGGAGTCTAAATCTTTGAAAAAAGAAACTGAAGTTTATAAAAAAGAAAGAAAATCTTTAGAAGAGAATGCTGAGAAGAGGATCTCTGAAGTGGAGAATGCCATGGAAAATAATCAAAAGCAACTTGAGAGTGCCACTTCTTCCATACTCATTCTGGAGGCAAAGAAGTCCTTGCTAGAGAAAGAGTTGGTGTCTGCTAAGTCGTTGGCTGAAAAGTCAATGGCAAGTTATCAACAAGCACTGGAGAGAGAGCAGACGACTATTCAACAAGCCCAGTCGTGGAAAACGGAGTTGGATTTGCTTCAAGATGAACTGGAGAAAGAGAAACAAAAGTTAGCTAACTTGCATCAGGAGATAGAAAAAGGGAAGAATCTTCTAGCCAATACTGAGGGTAGAGTGAAAAAGGAGAGAGCTAAGACAGAAAAAATCCTCGCACAGGCTGCATACTTTAGAAAAGAAAGACAACAGTCTGAAGCACTCATGAAAGCTGAGGAGGATGCCGTCAGAAAGAAGGCAGCTAGTCAACTGCAGGAATATGTGGACAGCATGGTAAAGCTAGAGAAGGAGATCGCTGTGCTAAGACTAAAATCTGGTTCCAAAATAAGTACTTCATCCGTGGTGAAAGAAAACAAGAAATCTGAGACGGTGATGACAGGGGGCTCCCAAGACAAACCAGCTGGTGGAAGATTGAAGCGGGAGCATGAGTGTGTCATGTGCCTATCAGAGGAGAGGTCGGTTGTTTTTCTGCCATGTGCGCATCAGGTTTTGTGTCCGAATTGCAATGAGCTCCATGAGAAGCAAGGGATGAAGGAATGCCCTTCATGTAGGACCACCATCGAATTTAGGATTCATGCCAAATTTCTTGGGCAGCAGTAG 2301 0.4189 MCQCRTLDTCLIPETSLIRSVGATEMEVIDKGIIMAEEMDKTVGSEQGCNYKRKLDDESSSMVTEDGSLSVEDDFPPYEFTNAQSFDSTELGLGCCTEEQQLGVLEVEDWKDPMATQLEDLLMSNLEAIFSNAIKKVVDLGGYSQEMAEMAVSRKSLYTEGDPLTNIVYNTLNTLKGKGTETPADFVFQNTKQLLHYSLVEMLSVLRELKPSLTVTEAMWELLVHDLSITRVIAPEGQLSGGDSSEQSSDKSSTAPSKLNVQSDMIGSMSVTTFTNISQESKSESNSQLMKSRKHHKEFTSVLREKFFHMKEPKACGKAGVKLGKLTSVSGLIVEKKLKPPSEVPNQKMKRGSSNTKGVSIAGVCRISTNDDSALPEGGSAVKLPTKDATSTSPTVKTAKPKPKPFSSAAQKVQNYCAAIPFDEASGKFVPRDEKDEQVLKLVSRAQELQDEVQSWNDWANKKVMQVADKLRKLQVESKSLKKETEVYKKERKSLEENAEKRISEVENAMENNQKQLESATSSILILEAKKSLLEKELVSAKSLAEKSMASYQQALEREQTTIQQAQSWKTELDLLQDELEKEKQKLANLHQEIEKGKNLLANTEGRVKKERAKTEKILAQAAYFRKERQQSEALMKAEEDAVRKKAASQLQEYVDSMVKLEKEIAVLRLKSGSKISTSSVVKENKKSETVMTGGSQDKPAGGRLKREHECVMCLSEERSVVFLPCAHQVLCPNCNELHEKQGMKECPSCRTTIEFRIHAKFLGQQ* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3268 766 Coils Coil 566 607 - -
Mtr1g3268 766 MobiDBLite consensus disorder prediction 238 262 - -
Mtr1g3268 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 686 760 IPR013083 -
Mtr1g3268 766 Pfam Family of unknown function (DUF6592) 125 231 IPR046527 -
Mtr1g3268 766 SUPERFAMILY RING/U-box 707 757 - -
Mtr1g3268 766 ProSiteProfiles Zinc finger RING-type profile. 711 751 IPR001841 -
Mtr1g3268 766 Coils Coil 644 671 - -
Mtr1g3268 766 MobiDBLite consensus disorder prediction 372 407 - -
Mtr1g3268 766 Pfam Zinc finger, C3HC4 type (RING finger) 708 755 - -
Mtr1g3268 766 MobiDBLite consensus disorder prediction 240 262 - -
Mtr1g3268 766 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RF298-RELATED 15 762 - -
Mtr1g3268 766 Coils Coil 464 537 - -
Mtr1g3268 766 Coils Coil 432 452 - -
Mtr1g3268 766 MobiDBLite consensus disorder prediction 277 296 - -
Mtr1g3268 766 PANTHER OS05G0141500 PROTEIN 15 762 IPR046934 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3268 Mtr-Chr1 43990649 43995970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3268 711 758 C3H Transcription Factor Family AT1G73950 50.000 7.93e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3268 - - mtr:MTR_1g089740 1448.34