Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3237 ATGGACTTGTACGGTCGGAGCCCCACTAGAAATGGATCCAACCCGCTTAATCAACATGAATGGCGTTCACCTGCTGCTGATCTTGGAGAGTCGATGTGGCATTTATCACTTGGTAGTGGTGGTGGTGTTGAATCTTACCCAGAGAGACATGGTGTGCCGAATTGTGCTTATTATATGAGAACTGGGTTTTGTGGATATGGTGGAAGGTGTCGTTTTAATCACCCGCGTGATCGTGCTGCGGTTGCTGCTGCAGTAAGAGCTACAGGGGACTACCCGGAGAGGCTTGGCGAACCTCCATGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGCGCGTCCTGTAAATTCCACCATCCCAAAAACGGAGGGGGATATTTAAGCCAAGCTCCACTAAATATTTATGGATACCCATTACGACCGGGCGAGAGTGAGTGCTCCTATTATTTGAAAACGGGGCAGTGCAAATTTGGCGTAACTTGTAAATTCCACCATCCTCAACCTGCTGGCACTTCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCAACGGTTCCTCCTCTGCCAGAACAGTTTGGAGGAGCTTCTGCAAGTGTGCGAGTGGCTAGACCTCCTGTGTTACCCGGTTCATATGTACAAGGGGCTTATGGTCCCGTGCTTCTTTCCCCAGGGGTTGTTCCATTTCCTGGATGGAGTCCTTATTCGGCTCCTGTAAGCCCTGTGTTATCTCCTGGCGCGCAACCTGCTGTTGGGGCTACTTCTCTTTACGGAGTAACTCAGTTGTCGTCATCAACATCAGCTTTTGCTAGACCTTATACTCCTCTGCCCTCTTCTCCTGGCCCTGGAGGAAGCACTCTTCAGGAAAAAGTATTTCCTGAAAGACCCGGTGAACCGGTCTGCCAATACTATATGAGAACTGGGGACTGTAAATTTGGATTAGCCTGTCGATATCATCATCCACGGGACCAGGTTGCTGCACGACCACTTCTTAGTCCCTTTGGTCTTCCTCTACGCCCGGGTGTACAGCCTTGTTCATTTTATATACAAAATGGGCATTGCAAGTTTGGCTCGACGTGCAAGTTTGATCATCCCGTGGGGTCAATGAGATACAATCCATCAGCATCTTCTCTTATTGATGTTCCAGTTGCTCCGTACCCAGTTGGGTCTTTACTATCTAACCTGGTTCCTTCAACATCTTCAGAATTTCGGCCTGAACTGAAGTCAGGGTCCAATTCCTTTTCAGCCAGAATGCATTCATCTGGAAATGGTTCTGGTACCTCTGTTGGTTTAATTTTTTCACAAGGTGGGTCTGTCTCACTGTCTGGTGCGCAACTCTCAAGACAGAGTTCTGCTTCTTTGAACGGTAGCAGAGGCAGCAGACAAAGCGGTGAGATACATTGA 1413 0.4805 MDLYGRSPTRNGSNPLNQHEWRSPAADLGESMWHLSLGSGGGVESYPERHGVPNCAYYMRTGFCGYGGRCRFNHPRDRAAVAAAVRATGDYPERLGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNIYGYPLRPGESECSYYLKTGQCKFGVTCKFHHPQPAGTSLPASAPQFYQQVQSPTVPPLPEQFGGASASVRVARPPVLPGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSSTSAFARPYTPLPSSPGPGGSTLQEKVFPERPGEPVCQYYMRTGDCKFGLACRYHHPRDQVAARPLLSPFGLPLRPGVQPCSFYIQNGHCKFGSTCKFDHPVGSMRYNPSASSLIDVPVAPYPVGSLLSNLVPSTSSEFRPELKSGSNSFSARMHSSGNGSGTSVGLIFSQGGSVSLSGAQLSRQSSASLNGSRGSRQSGEIH* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3237 470 Gene3D - 297 379 - -
Mtr1g3237 470 Gene3D - 93 177 - -
Mtr1g3237 470 Gene3D - 43 90 - -
Mtr1g3237 470 SMART c3hfinal6 94 121 IPR000571 GO:0046872
Mtr1g3237 470 SMART c3hfinal6 140 167 IPR000571 GO:0046872
Mtr1g3237 470 SMART c3hfinal6 49 76 IPR000571 GO:0046872
Mtr1g3237 470 SMART c3hfinal6 298 325 IPR000571 GO:0046872
Mtr1g3237 470 SMART c3hfinal6 342 369 IPR000571 GO:0046872
Mtr1g3237 470 ProSiteProfiles Zinc finger C3H1-type profile. 298 326 IPR000571 GO:0046872
Mtr1g3237 470 SUPERFAMILY CCCH zinc finger 345 373 IPR036855 GO:0046872
Mtr1g3237 470 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Mtr1g3237 470 PANTHER PROTEIN PHOSPHATASE RELATED 1 400 - -
Mtr1g3237 470 SUPERFAMILY CCCH zinc finger 52 78 IPR036855 GO:0046872
Mtr1g3237 470 ProSiteProfiles Zinc finger C3H1-type profile. 94 122 IPR000571 GO:0046872
Mtr1g3237 470 SUPERFAMILY CCCH zinc finger 301 328 IPR036855 GO:0046872
Mtr1g3237 470 SUPERFAMILY CCCH zinc finger 97 122 IPR036855 GO:0046872
Mtr1g3237 470 SUPERFAMILY CCCH zinc finger 143 168 IPR036855 GO:0046872
Mtr1g3237 470 MobiDBLite consensus disorder prediction 447 470 - -
Mtr1g3237 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 344 368 IPR000571 GO:0046872
Mtr1g3237 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 121 IPR000571 GO:0046872
Mtr1g3237 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 167 IPR000571 GO:0046872
Mtr1g3237 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 76 IPR000571 GO:0046872
Mtr1g3237 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 300 325 IPR000571 GO:0046872
Mtr1g3237 470 ProSiteProfiles Zinc finger C3H1-type profile. 49 77 IPR000571 GO:0046872
Mtr1g3237 470 MobiDBLite consensus disorder prediction 405 424 - -
Mtr1g3237 470 ProSiteProfiles Zinc finger C3H1-type profile. 342 370 IPR000571 GO:0046872
Mtr1g3237 470 MobiDBLite consensus disorder prediction 1 21 - -
Mtr1g3237 470 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32 1 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3237 Mtr-Chr1 43645601 43650609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3237 19 415 C2H2 Transcription Factor Family AT5G18550 52.153 2.32e-125 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr1g3237 zf-CCCH 1.1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3237 - - lja:Lj5g3v1665190.1 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3237 1 43645601 43650609 Mtr1g3237 1 43645601 43650609 ECH