Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3235 ATGGGTGATAACAACAAAGGGAAACAAGTCTCAGATAGAGAAGTCTTTAAGTACAACACCAATTTCACATCTCATGAGCAAGAGCAAGATCATGAAGTAATCAAAGAGCAAGATCGTTTGCTTCCAATAGCTAATGTTGGTAGGATCATGAAACAAATCTTGCCTCCAAATGCAAAAATCTCGAAAGATGCTAAAGAAACCATGCAAGAGTGTGTCTCAGAGTTTGTTAGTTTTGTAACTGGTGAAGCATCTGACAAGTGTCACAAGGAGAAGCGCAAGACAGTGAATGGTGATGATGTTTGTTGGGCTTTGGGGACACTAGGGTTTGATGATTACGCTGAGCCACTCAAAAGGTATTTGTATAAGTATAGGGAATTGGATGCGGAAAGAGGGAACCAAAATAACAAGGGTAACAACAACATCAACATCAACATCAACAACAACAACAGTGATGAAATTGAAAACAATATTAATGAAACATATTATTATGATGATGGTAAGTCACAAACTCCAAGGAAAGTGAATGTTGCTTCCTCTTCTATGTTCAATAATAGGAACAGTGGCCCTCAGTCAAGGGGATATTGA 585 0.3829 MGDNNKGKQVSDREVFKYNTNFTSHEQEQDHEVIKEQDRLLPIANVGRIMKQILPPNAKISKDAKETMQECVSEFVSFVTGEASDKCHKEKRKTVNGDDVCWALGTLGFDDYAEPLKRYLYKYRELDAERGNQNNKGNNNINININNNNSDEIENNINETYYYDDGKSQTPRKVNVASSSMFNNRNSGPQSRGY* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3235 194 SUPERFAMILY Histone-fold 37 160 IPR009072 GO:0046982
Mtr1g3235 194 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 40 104 IPR003958 -
Mtr1g3235 194 MobiDBLite consensus disorder prediction 132 149 - -
Mtr1g3235 194 Gene3D Histone, subunit A 25 161 IPR009072 GO:0046982
Mtr1g3235 194 MobiDBLite consensus disorder prediction 162 194 - -
Mtr1g3235 194 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
Mtr1g3235 194 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Mtr1g3235 194 PRINTS CCAAT-binding transcription factor subunit A signature 106 124 - -
Mtr1g3235 194 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 15 163 - -
Mtr1g3235 194 MobiDBLite consensus disorder prediction 130 149 - -
Mtr1g3235 194 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 163 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3235 Mtr-Chr1 43621552 43622484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3235 26 137 CCAAT-HAP3 Transcription Factor Family AT2G47810 73.214 2.99e-61 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mtr1g3235 CBFD_NFYB_HMF 4.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3235 K08065 - gmx:100817274 213.772