Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3227 ATGGTTGAAACCAGACGTGGTTCTTCTTCTTCCAAACGCCCTTTATCTTCTTCTCCTCCTTCCAATACCAAACGATCCAAGGTTTCTCAAGATGCTTCATCAACCACTTTGCCTTCAATTCCGGTCAAAGAATCTGCAAAGAGAAACGAATCTGGTAAACCTGATGATATTCAACAACCATCTGATCTACCAGAAACTGCTTCTTTGAACGTTCTTGATGGTGGTGAATCTGCTGAGAAACCAAAAGTGGCTGCCCCGGTGGTTTCTTCTCGGCGAAAACCACGTTCTGTGGCCAAACTGATAGCTAAGCCTGCTGCTTGGGGAAAGCTTATATCTCAAAGCTCTCAGAATCCTCACTTGTCCATAAGTGATCCAATCTTCACTGTTGGACAAGGTCGTCAGAGTAATTTGGTGCTTAAAGATCCTACCATTGGTAATGTTTTGTGCAAGTTGAGCCACATAGAGCAGCAACAGGGAGGTTCATCAGTTGCCCTTCTGGAAATCACAGGGGGTAAAGGTGTTGTGCAAGTCAACGGCAAGACTTTCCGAAGGACTACCAAGATGATTTTAAATGGAGGCGATGAGGTGATATTTGGTGCTTCGGGAAAACATGCTTATATCTTTCAGCTGCTCAAAAGTAACAATGTTTCTACTGCTGGTACACCTCCTTCTGTGAGTATTTTAGAAGCCCAGAGTGCTGCATTGAATGGGATGCAAGTTGAAGCTAGATCCGGAGACCCTTCGGCTGTGACAGGTGCATCAATATTGGCCTCTCTATCTAATATTCGCAAAGATTTATCTCTCATTTCACCTCCAGCTAAAACATGCAAGAAACAAAGTGCTGATATTTCATCACTACCTTCTGGCCATGGGGATAATGTTCCGGACAATGAAATGAAAGATACCACCAATAATGATGAATCAGCTGGAGTTTTTTCTTCTGGTAAAGATATTCCTTCATCCTCTACCACTGCTAACGAAAACCCTAGCCTTGACACCATGGATGTTGATGCCAACGCGGACACAGATGTTGGGAAGATGGCCAATGCCAATTACGAATTGAGGCCGTTGCTGTGCATGCTTACCGGATCAGGAACTGAATTTGATTTAAGTGGCAGCATTCACAAGATACTAGAAGATCAAAGGGAATTAAGAGAACTTGATACGCCAACAATATTGGCATCCACCAGGCGGCAAGCATTTAGGGACAGTTTAGAACAGAGAATTCTCAAAGCTGATGATATTGATGTCTCTTTTGAAACTTTCCCATATTACCTAAGTGATACAACAAAGAACGTGTTGGTAGCTTCTACATATATTCATTTGAAGTGCAATGGTATTGGAAAATATGCTTCAGATTTCTCGTCATTGTGCCCACGGATATTGTTATCTGGTCCTTCAGGTTCGGAAATATATCAGGAGACTTTGTCCAAGGCACTTGCAAAGCATTTTGGTGCCAGGTTACTGATTGTGGATTCACTTTCGCTGCCCGGGGGAACGCCATCAAAGGAAGTTGATTCTGCCAAAGAAAGTTCAAAGCCTGAAAGGCCAGCTGTTTTGGCCAAGAGAAGTGGCCAGGCTTCTACTTTACATCATAAGAAACCCACTTCTAGTGTTGATGCTGAAATTATTGGTGGATCTACATTAAGTTCGCAAGCTATGCTGAAGCAAGAGGTTTCTACTGCATCATCAAAAGGCACTGCTCTTAAAAAAGGTGATCGGGTAAAATTTGTCGGTAACTTTCCACCTACTGTTTCGTCACTGCAAAATTATGCTTCAAGTTCAAGGGGACCAAGCTATGGCTTCCGGGGCAAAGTTGTACTTGCTTTTGAAGACAACGAGTCTTCAAAAATTGGGGTCAGGTTTGATAAATCAATTCCAGATGGCAATGATCTTGGAGGCCATATCGAAGATGATCATGGTTTCTTTTGTTCCGCAAACCATTTACAACGGATAGAGAGTGCAGGAGGGGATGACGACAAAGTTGCAATTAATGAAATCTTCGAGGTTGCCTCTAATCAATGTAAAACTGGTGCACTTGTGTTGTTCATTAAAGATATAGAGAAGGCAATGGCTGGGAACACAGATGTTTTGAAAAGTAAATTTGAAACCCTGCCACAGAATATTGTGGTAATCGGCTCAAATACTCAGCTGGACAGTCGTAAGGAGAAGACCCATCCTGGGGGACTTCTGTTTACAAAGTTTGGGAGCAATCAGACTGCTCTACTTGATCTTGCTTTTCCGGATAACTTTAGTAAACTACATGATAAAACCAAAGAAAGCTCCAAATTAGTGAAGCAGCTCAACCGCCTTTTCCCAAACAAAGTGACAATACAAGGGCCTCAGGATGAAGCTTTACTCCCTGACTGGAAGCAGCAGTTAGATCGTGACATTGAAACTATGAAAGCACATTCCAATATTGTCTTGCTTCGTTCGGTCCTCAAAAGAACAGGATGGGATTGCTCTGACCTTGAGACAATTTGCATCAAAGATCAAACCCTAACTACTGAAAATGTGGAGAAGATCATTGGCTGGGCTGTAAGTTATCATTTTATGCAATCACATGAAGCTTCTACCGAAGAAGGAAAGCCCGCGATATCTGCAGAAAGCATTAAGTATGGGTTTGACATTTTTCAAAGCATCCAAAATGAGAACAAGAACGTAAAGAAGTCACTGAAGGATGTGGTTACTGAGAATGAATTTGAGAAAAAGTTGCTTGGTGATGTTATTCCGCCAACTGAAATTGGGGTCACATTTGAAGATATTGGAGCTTTAGAAAATGTGAAGGATACCTTGAAGGAATTGGTCATGCTTCCTCTTAAAAGGCCTGAACTGTTTTGTAAAGGACAACTAACTAAGCCTTGCAAGGGAATATTGCTTTTCGGTCCCCCTGGCACGGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTCATCAACATTTCAATGTCCAGCATTACTTCCAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTCTCCCTAGCCAGCAAAATTGCTCCAAGTGTTATATTTGTTGATGAGGTTGATAGTATGTTAGGGAGACGTGAAAACCCTGGTGAGCATGAGGCCATGCGTAAAATGAAGAATGAGTTTATGGTCAATTGGGATGGTCTGCGTACCAAAGAAAAAGAGCGTATACTTGTTCTTGCTGCTACAAACAGGCCCTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCAAGGAGATTGATGGTTGATTTGCCAGATGCTCCGAATAGAGGAAAAATTTTGAGAGTCATTTTAGCGAAAGAAGATTTGGCAGCCGATGTTGACTTGGAAGCTATAGCAAATATGACAGATGGATACTCAGGAAGTGACCTAAAGAATTTGTGTGTCACAGCAGCTCACTGCCCAATAAGGGAGATCTTGGAGAAGGAAAAGAAGGACAAAAGCTTAGCATTGGCCGAGAACAAACCTGAACCTGAATTGTGTAGCAGTGCAGACATTCGTCCCTTAAAGATGGAGGATTTTAGATATGCACATGAGCAGGTGTGTGCAAGTGTGTCATCAGAGTCGACAAATATGAACGAGCTACAACAATGGAATGATCTCTATGGAGAAGGCGGATCGAGAAAAATGAAATCTTTAAGCTACTTCATGTAG 3669 0.4222 MVETRRGSSSSKRPLSSSPPSNTKRSKVSQDASSTTLPSIPVKESAKRNESGKPDDIQQPSDLPETASLNVLDGGESAEKPKVAAPVVSSRRKPRSVAKLIAKPAAWGKLISQSSQNPHLSISDPIFTVGQGRQSNLVLKDPTIGNVLCKLSHIEQQQGGSSVALLEITGGKGVVQVNGKTFRRTTKMILNGGDEVIFGASGKHAYIFQLLKSNNVSTAGTPPSVSILEAQSAALNGMQVEARSGDPSAVTGASILASLSNIRKDLSLISPPAKTCKKQSADISSLPSGHGDNVPDNEMKDTTNNDESAGVFSSGKDIPSSSTTANENPSLDTMDVDANADTDVGKMANANYELRPLLCMLTGSGTEFDLSGSIHKILEDQRELRELDTPTILASTRRQAFRDSLEQRILKADDIDVSFETFPYYLSDTTKNVLVASTYIHLKCNGIGKYASDFSSLCPRILLSGPSGSEIYQETLSKALAKHFGARLLIVDSLSLPGGTPSKEVDSAKESSKPERPAVLAKRSGQASTLHHKKPTSSVDAEIIGGSTLSSQAMLKQEVSTASSKGTALKKGDRVKFVGNFPPTVSSLQNYASSSRGPSYGFRGKVVLAFEDNESSKIGVRFDKSIPDGNDLGGHIEDDHGFFCSANHLQRIESAGGDDDKVAINEIFEVASNQCKTGALVLFIKDIEKAMAGNTDVLKSKFETLPQNIVVIGSNTQLDSRKEKTHPGGLLFTKFGSNQTALLDLAFPDNFSKLHDKTKESSKLVKQLNRLFPNKVTIQGPQDEALLPDWKQQLDRDIETMKAHSNIVLLRSVLKRTGWDCSDLETICIKDQTLTTENVEKIIGWAVSYHFMQSHEASTEEGKPAISAESIKYGFDIFQSIQNENKNVKKSLKDVVTENEFEKKLLGDVIPPTEIGVTFEDIGALENVKDTLKELVMLPLKRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKEKERILVLAATNRPFDLDEAVIRRLPRRLMVDLPDAPNRGKILRVILAKEDLAADVDLEAIANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKDKSLALAENKPEPELCSSADIRPLKMEDFRYAHEQVCASVSSESTNMNELQQWNDLYGEGGSRKMKSLSYFM* 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3227 1222 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 57 1222 - -
Mtr1g3227 1222 MobiDBLite consensus disorder prediction 1 94 - -
Mtr1g3227 1222 SMART AAA_5 954 1091 IPR003593 -
Mtr1g3227 1222 MobiDBLite consensus disorder prediction 1 42 - -
Mtr1g3227 1222 Gene3D - 1090 1184 - -
Mtr1g3227 1222 ProSitePatterns AAA-protein family signature. 1061 1080 IPR003960 GO:0005524|GO:0016887
Mtr1g3227 1222 Gene3D - 916 1196 IPR027417 -
Mtr1g3227 1222 Gene3D - 106 218 - -
Mtr1g3227 1222 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 57 1222 - -
Mtr1g3227 1222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 917 1194 IPR027417 -
Mtr1g3227 1222 MobiDBLite consensus disorder prediction 500 538 - -
Mtr1g3227 1222 SUPERFAMILY SMAD/FHA domain 105 201 IPR008984 GO:0005515
Mtr1g3227 1222 Pfam ATPase family associated with various cellular activities (AAA) 958 1087 IPR003959 GO:0005524|GO:0016887
Mtr1g3227 1222 Pfam AAA+ lid domain 1111 1147 IPR041569 -
Mtr1g3227 1222 MobiDBLite consensus disorder prediction 304 333 - -
Mtr1g3227 1222 MobiDBLite consensus disorder prediction 277 291 - -
Mtr1g3227 1222 CDD AAA 923 1089 - -
Mtr1g3227 1222 MobiDBLite consensus disorder prediction 277 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3227 Mtr-Chr1 43554635 43565779 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3227 953 1158 Calmodulin-binding Proteins AT3G56690 35.407 2.29e-31 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3227 - - gmx:100801477 1838.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3227 1 43554635 43565779 Mtr1g3227 1 43554635 43565779 ECH