Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3226 ATGGTTGAAACTAGAAGCAGTTCCTCTTCTTCCAAACGTCCTCTCTCTTCTCCTTCATCATCTCCTTCCAACACAAAAAAACGATCCAAGGTCTCAAAGAATGTTTCATCTAAGGTTAATCCCTCACCGTTGGTCAACGAATCTGGTGAACGAGAGAGAAGACCATCTGATCTGTCAGAAATGGCTGTTGATGGTAACAATGACAAGTCTTCTTCTCTTCCAAACGAAGATGAAGCTTTGGTGTCTCCTCCTCAGTGTATAGGTCAAATTGCTGAGAAATCAAAGGTATTACCGCCGTTATCTCGGTCGAAGAAACGCTGCACAAAATCTAATTCTAAGTCAGCTTGGGGGAAGCTCATTTCTCAATTTTCTGAGAACCCTCACCTGCCCATGTGTGATCCTATCTACACTGTTGGCCAATGTCGTCAATGTAATTTATGGCTGAAAGATCCCTCTGTTAGTAATGTTTTGTGCAAATTGAGCCATATAGAGCATGGAGGTTCATCTGTTGCATTGCTGGAAATCATAGGGAATTGTGGTGCTGTGAAAGTTAATGGAAAGATGTGTGGGAAGAAATCCCGTCATATTTTAAGTGGAGGTGATGAAGTTGTCTTTGGTGTTTCCGGCAAGCAGGCTTATATCTTTCAGCAGCTCAATAATAACATCACTACTGCCAATATACCTTCTCCTGTGACCATTTTAGAAGCCCAGGGTGCTTCAATAACTGGAACGCAACTTGATGCAAGATCTGGAGACCTGTCGTCTGTTGCTGGAGCTTCAATATTGGCCTCTTTTTCTGAACTTAATGAAGATTTATCCATGATTTCCCCTTCTTCTAACACTAGCAAGAACATGCAGCAGAAGACTGATGTTTCATCACTACCTGCCGGCAATGGAGATGATAAGGCAAACACTGACATGAAGCACAACATCATTAATGACGAACCAGATAGAGTTTTTTCTGCTGAGGAAACTGGTCTTCCGTCCTCTACCACCGTTAATGAAGATCCAAATGTTGTTGCTGTAGAAGTCAATGCTGGTGTGGATGCAGATGTTGGGAAGATGACTGCTGCTTCCTGCAAATTGAGACCATTATTGCACAAGCTTTCTGGATCATGTCCTGAATTTGATTTGAGTGGCAACATTGCCAAGATATTGGAAGAACGTAAGGAATTAAAGGAACTCCTTAAAGATGTTGATACCCCGACAATATTGACATCGCCCAAGCAACAAGCATTAAAGGATAGCTTACAGATGAGAATTCTCAATGCTGAGAATATTGATGTTTCCTTTGAAAGTTTCCCATATTATCTAAGTGATACAACAAAGAATGTTTTGATTACTTCTGCATACATTCATTTGAAGTGCAATGGCTCTGGAAAATATGTTTCAGAACTTCCGTCGCTGTCCCCACGGATATTGTTATCTGGTCCTGCAGGCTCTGAAATATATCAGGAGACTCTGTCAAAGGCACTTGCAAAACATTTTGGTGCGTGGCTACTAATTGTGGATTCTCTTTCACCTCCTGGTCGAACACCATTGAAGGAAGTTGATTCTACTAAAGAAATTCCAATTCCAAGGACTGAAAGAACATCTATGTTTACCAAGAGAAGTACTCCGGCTGCTACAATACATATACAGCATAAGAAACCAGCTTCTAGTGTTGATGCCCAAATTATAGGTGGATCCACATCTAGTTCACAGGCTGTACTGAAGCAAGAAGTTTCTACGGCATCATCAAAAGGCAGTGCTTTTAAAACAGGTGATCGAGTAAAATATGTTGGCGACTTCCCTTCTGCTGCCTCATCACCACAAGTTTTTCCTTCAAGGGGACCAAGTTATGGTTGCCGGGGCAAAGTTCTCCTTGCTTTTGAAAATAATGGGTCTTCAAAAATTGGAGTTAGATTTGAGAAATCAATTCCAGATGGAAATGATCTTGGAGGGCTCTGCGAAGATGACCGTGGGTTCTTTTGTTCTGCCAATCATTTGGTACTGGTAGATGGTTGTGGAGGGGATGACTCTGGAAAAGTTGCTATTAATGAAATCTTTGAGATTGCCTCTAGTCTGAGTAAAAGTGGAGCCCTAGTGTTGTTGATTAAAGATATAGAGAAGGGTGTGGCTGGGAACTCAGAAGTTTTAAAAAGTAAATTTGCAAGCTTGCCACAGAATGTTGTAGTAATTGGTTCACATATCCACCCGGACAATCGTAAAGAGAAGACCCAACCTGGCAGCCTTCTGTTTACAAAATTTGGAGGCAATCAGACAGCACTACTTGATCTTGCTTTTCCGGATAACTTTACGAGGCTGCATGATAGGAGCAAAGAAACCCCCAAAGTAATGAAGCAACTCAACAGGTTTTTCCCAAACAAAGTTACAATACAGCTGCCTCAGGATGAGGCTTTACTTTCTGATTGGAAACAGCACCTAGAACGTGATGTAGAAACTATGAAAGCTCAGTCCAACGTTGTCAGCATTCGCTTGGTCCTCAACAAGTTTGGATTGGATTGCCCTGAACTTGAGACTCTTTCCATCAAAGATCAAACTCTGACAACTGAAAATGTGGAGAAGATTATTGGCTGGGCAATAAGTTACCATTTTATGCATTCATCTGAAGCTTCTACCGAAGAATCAAAGCCTGTGATATCTGCAGAGAGCATTCAGTATGGGTTTAACATTCTACAGGGTATTCAAAATGAGAACAAGAGCGTAAAAAAATCATTGAAGGACGTAGTTACTGAAAATGAATTTGAGAAAAAATTGCTTGGTGATGTTATTCCACCAACTGATATTGGGGTCTCATTCAATGATATTGGAGCTTTAGAAAATGTTAAGGACACCTTAAAGGAATTGGTCATGCTTCCTCTTCAAAGGCCTGAATTATTTTGCAAAGGACAACTAACTAAGCCTTGCAAGGGAATATTGCTTTTTGGCCCCCCTGGCACGGGAAAAACAATGCTTGCAAAGGCGGTAGCAACCGAAGCTGGAGCAAATTTCATTAACATCTCCATGTCTAGCATTACTTCGAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTTTTTTCTCTGGCCAGCAAAATTGCTCCAAGCGTTATTTTTGTTGATGAGGTTGATAGTATGTTGGGGAGACGTGAAAATCCTGGTGAGCACGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTTAATTGGGATGGTCTACGTACAAAAGATAGAGAGCGTGTACTTGTTCTTGCTGCCACAAACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGAAGATTGATGGTTAATTTGCCAGATGCAGCAAACAGAGAAAAAATTATGAGAGTCATTTTAGCAAAAGAAGAATTGGCGCCTGATGTTGATTTGGAAGCATTAGCAAATATGACTGATGGATACTCCGGAAGTGACCTAAAGAATCTGTGCGTCACTGCCGCGCACTGTCCAATAAGGGAGATCTTGGAGAAGGAAAAGAAGGAGAGAACCTCTGCATTGGCTGAGAACAAGCCTTTACCTAGATTGTGTAGCAGTGCCGACATTCGTCCCTTAAAGATTGAAGATTTTAAATATGCACACGAGCAGGTGTGTGCAAGCGTGTCATCAGATTCAACAAATATGACCGAACTTCTCCAATGGAATGACCTCTATGGAGAAGGTGGATCGAGAAAAAAGACATCTTTGAGCTATTTCATGTAA 3714 0.4136 MVETRSSSSSSKRPLSSPSSSPSNTKKRSKVSKNVSSKVNPSPLVNESGERERRPSDLSEMAVDGNNDKSSSLPNEDEALVSPPQCIGQIAEKSKVLPPLSRSKKRCTKSNSKSAWGKLISQFSENPHLPMCDPIYTVGQCRQCNLWLKDPSVSNVLCKLSHIEHGGSSVALLEIIGNCGAVKVNGKMCGKKSRHILSGGDEVVFGVSGKQAYIFQQLNNNITTANIPSPVTILEAQGASITGTQLDARSGDLSSVAGASILASFSELNEDLSMISPSSNTSKNMQQKTDVSSLPAGNGDDKANTDMKHNIINDEPDRVFSAEETGLPSSTTVNEDPNVVAVEVNAGVDADVGKMTAASCKLRPLLHKLSGSCPEFDLSGNIAKILEERKELKELLKDVDTPTILTSPKQQALKDSLQMRILNAENIDVSFESFPYYLSDTTKNVLITSAYIHLKCNGSGKYVSELPSLSPRILLSGPAGSEIYQETLSKALAKHFGAWLLIVDSLSPPGRTPLKEVDSTKEIPIPRTERTSMFTKRSTPAATIHIQHKKPASSVDAQIIGGSTSSSQAVLKQEVSTASSKGSAFKTGDRVKYVGDFPSAASSPQVFPSRGPSYGCRGKVLLAFENNGSSKIGVRFEKSIPDGNDLGGLCEDDRGFFCSANHLVLVDGCGGDDSGKVAINEIFEIASSLSKSGALVLLIKDIEKGVAGNSEVLKSKFASLPQNVVVIGSHIHPDNRKEKTQPGSLLFTKFGGNQTALLDLAFPDNFTRLHDRSKETPKVMKQLNRFFPNKVTIQLPQDEALLSDWKQHLERDVETMKAQSNVVSIRLVLNKFGLDCPELETLSIKDQTLTTENVEKIIGWAISYHFMHSSEASTEESKPVISAESIQYGFNILQGIQNENKSVKKSLKDVVTENEFEKKLLGDVIPPTDIGVSFNDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDRERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAANREKIMRVILAKEELAPDVDLEALANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKERTSALAENKPLPRLCSSADIRPLKIEDFKYAHEQVCASVSSDSTNMTELLQWNDLYGEGGSRKKTSLSYFM* 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3226 1237 Gene3D - 115 225 - -
Mtr1g3226 1237 MobiDBLite consensus disorder prediction 1 84 - -
Mtr1g3226 1237 ProSiteProfiles S4 RNA-binding domain profile. 180 218 - -
Mtr1g3226 1237 SUPERFAMILY SMAD/FHA domain 115 210 IPR008984 GO:0005515
Mtr1g3226 1237 CDD FHA 133 207 IPR000253 GO:0005515
Mtr1g3226 1237 MobiDBLite consensus disorder prediction 275 294 - -
Mtr1g3226 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 932 1212 IPR027417 -
Mtr1g3226 1237 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1237 - -
Mtr1g3226 1237 Pfam AAA+ lid domain 1126 1161 IPR041569 -
Mtr1g3226 1237 Pfam FHA domain 136 206 IPR000253 GO:0005515
Mtr1g3226 1237 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 1237 - -
Mtr1g3226 1237 Pfam ATPase family associated with various cellular activities (AAA) 973 1102 IPR003959 GO:0005524|GO:0016887
Mtr1g3226 1237 SMART AAA_5 969 1106 IPR003593 -
Mtr1g3226 1237 CDD AAA 971 1104 - -
Mtr1g3226 1237 ProSitePatterns AAA-protein family signature. 1076 1095 IPR003960 GO:0005524|GO:0016887
Mtr1g3226 1237 MobiDBLite consensus disorder prediction 275 303 - -
Mtr1g3226 1237 Gene3D - 1105 1199 - -
Mtr1g3226 1237 MobiDBLite consensus disorder prediction 63 78 - -
Mtr1g3226 1237 MobiDBLite consensus disorder prediction 1 44 - -
Mtr1g3226 1237 Gene3D - 931 1211 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3226 Mtr-Chr1 43534612 43549265 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3226 932 1217 Calmodulin-binding Proteins AT3G56690 36.860 5.31e-42 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3226 - - gmx:100801477 1770.36