Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3223 ATGTCTTCTTTAGATTCAACTTGGATCACATCTCTTTCATGTTCACCTTCTTCAGGTGATGCTGTTGCTGCATATGCATTACCTCAATGGTTGAGATTCATTTTCCTCTCACCATGTCCTCAAAGAGCTCTTCTTTCAGCCGTTGATGTCTTACTCTTGTTTACTCTATTAGTCTTTGCCATCACAAAGCTTTATTCTAGGTTCACTAGTTCCAATAGAACCCACTCAGAAGAAATCAACAAACCACTTATCAGTAACACAAGAGCTTTGAACACAAGAACAACTCTATGGTTCAAGCTAACTCTAATTGCAACCATTGTTTTAACTGTATTGTATACTGTTGGTTGCATTTTAGTTTTTAGCAGTTCCAATGTTGAATCACCATGGAAACAACTTGATGGACTTTTTTGGGTTGTTCAAGCAATAACTCAATTAGTCCTTGTAATCTTAATCATCCATGTTAAAAGATTTGAAGCTGTTGTTCACCCTTTATCGCTTCGAATTTATTGGATTGCAAATTTCGTTGTTGTTGCTTTGTTCACTGCTTCTGGTGTTATACGTTTGGTCTCTTTGGAGGGAAGTTACTTTTTCATGGTGGATGATGTTGTGTCTTTTGTTTCATTGCCTTTTTCACTTTTTCTGCTTTGTGTTGGTGTTAAAGGTTCCACTGGTGTTATTAAGTCAAGAGACGAATCTCAATTGGTTATTGATAATGACGAGGAAACAAAACTAAATGGTTATGATGATCATGGTTTGAATAAACCAAATGCTACTACTGGTTTTGCTTCAGCTTCTCAGTTTTCTAAGACCTTTTGGATTTGGTTAAACCCTTTGTTGAGTAAAGGGTACAAGTCACCGCTTAATATCGATGACGTTCCATCCCTTTCTCCACAGCATAGAGCTGAGAGAATGTCTGTTATCTTTGAATCAAAATGGCCTAAATCGGATGAGAGGTCGAAGAATCCAGTAAGAGTCACGTTGCTTCGGTGTTTCTGGAAGGATATAATGTTCACTGCTTTTCTTGCTGTCATTAGGCTGTCTGTTATGTTTGTTGGACCCGTTTTAATTCAAAATTTTGTTGATTTCACTTCTGGAAAAGGTAGTTCTGTGTATGAAGGATACTATCTAGTGCTGATTCTTGTTGCAGCAAAATTTGTTGAAGTTTTGACAACTCATCACTTCAACTTCAACTCTCAGAAACTTGGAATGCTTATTAGATGCACTCTCATTACTTCTTTGTATAAAAAGGGGTTGAGGCTATCTTGTTCTGCAAGACAGGATCATGGTGTTGGTCCTATTGTGAATTACATGGCTGTTGATACACAACAATTATCTGACATGATGCTTCAGTTACACGCCGTTTGGATGATGCCGTTTCAAGTTGGTATTGGTTTGTTTTTGCTGTACAATTGTCTCGGCGCTTCGGCACTTACCGCGCTTGTTTGCCTTCTTCTTGTTATCGTGTTTATCGTGATAACAACTCGACAGAACAAAAACTACCAGTTTCAGGCGATGATAAGCCGTGATTCGAGAATGAAAGCTGTGAATGAGATGCTTAATTACATGCGTGTTATCAAGTTTCAGGCATGGGAGAATCATTTCAACGATAGAATCTTGAGTTTCCGTGGGTCCGAATTCGGGTGGCTATCGAAGTTTATGTACTCGATTTGTGGCAATATCATTGTGTTGTGGAGCTCTCCTATGTTGATATCAACTCTCACTTTTGGTACCGCGCTTTTGCTTGGAGTTCGACTTGATGCTGGAACTGTTTTCACTACAACGTCTGTGTTTAGGATTCTGCAGGAACCTATTAGGACTTTTCCTCAGTCAATGATATCTCTTTCACAAGCTTTAGTATCACTTGGGAGGTTGGATAGGTACATGTCTAGCAGGGAACTAAGTGATGATTCAGTTGAGAGAAATGAAGGGTGTGATGGAGTAATTGCTGTGGATGTTCAAGATGGTACCTTTAGTTGGGATGATGAAGGCCTAGAACAAGATTTGAAAAATATTAATTTGAAGGTTAATAAGGGAGAACTCACAGCTATTGTTGGTACTGTAGGGTCTGGCAAATCTTCTCTTCTTGCATCAATTCTCGGTGAAATGCACAGAAATTCTGGAAAGGTTCAAGTTTGTGGGAGTACTGCTTATGTTGCGCAAACTTCTTGGATTCAAAATGGGACAATTGAAGAGAACATTCTGTTTGGTTTACCAATGAACAGACAAAAGTACAATGAAATTATCAGAGTTTGTTGCTTGGAAAAAGACTTAGAAATGATGGAATATGGGGATCAGACAGAGATTGGAGAGCGTGGCATAAACCTTAGTGGCGGTCAGAAGCAGCGTATTCAACTTGCACGAGCTGTATACCAAGACTGTGACATATATCTTCTTGATGATGTATTCAGTGCAGTTGATGCTCATACCGGCACTGAAATATTTAAGGAATGCGTGAGGGGAGCTCTAAAAGGAAAGACCATTGTTCTTGTAACACACCAAGTAGACTTCTTACATAATGTGGATCGTATTGTGGTGATGAGGGATGGAATGATAGTTCAATCGGGTCGATACAATGACTTACTTGATTCTGGATTGGATTTTGGTGTTCTAGTAGCTGCGCATGAGACATCTATGGAACTAGTAGAACAAGGCGCGGCCGTGCCTGGTGAAAATTCAAACAAACTGATGATATCTAAGTCAGCGTCTATTAACAACAGAGAAACCAATGGTGAAAGTAATTCTCTTGACCAGCCTAATTCTGCTAAGGGAAGTTCAAAACTTGTCAAAGAAGAGGAAAGAGAAACCGGTAAAGTTAGCTTCAATATCTATAAACGCTACTGCACTGAGGCTTTTGGATGGGCGGGAATTTTAGCAGTGCTCTTTCTTTCTGTGTTGTGGCAAGCGTCTATGATGGCTAGCGATTATTGGCTTGCATTTGAAACCTCAGTCGAGCGTGCTGAAGTTTTCAATCCTGTTGTGTTTATTTCCATCTATGCAGCTATTACTATAGTTTCAGTTATTTTGATTGTGGTGAGATCCTATTCTGTAACAATCTTTGGGTTAAAGACAGCACAGATTTTCTTCAATCAAATTCTTACTAGCATCTTGCATGCTCCCATGTCTTTCTATGACACCACTCCATCAGGGAGGATTCTAAGCAGGGCATCCACTGATCAGACCAATGTTGATATCTTCATCCCTTTGTTTATCAATTTTGTTGTGGCCATGTATATTACAGTGATCAGTATCGTCATAATCACATGCCAGAATTCTTGGCCAACGGCTTTCTTGCTAATTCCTCTTGTTTGGTTGAACATATGGTACCGGGGTTATTTTCTTTCTACCTCTCGTGAATTAACACGTCTGGATTCAATTACAAAAGCACCTGTCATTGTTCATTTCTCCGAAAGCATTTCTGGGGTCATGACAGTCCGCGCATTCAGAAAACAGAAAGAATTTCGTTTAGAAAATTTTAAAAGAGTGAACTCTAATTTGCGAATGGATTTCCACAACTATAGTTCCAATGCGTGGTTAGGTTTCCGCTTAGAATTGCTTGGAAGCTTGGTTTTCTGCCTTTCGGCTTTGTTCATGATCCTGTTACCCAGCAATATCATAAAACCAGAAAATGTTGGTTTATCTCTATCTTATGGATTGTCGTTGAACTCGGTGCTGTTCTGGGCTATATACATGAGCTGTTTCATTGAAAACAAAATGGTATCTGTTGAGAGGATAAAACAGTTCTCAAATATTCCATCAGAAGCAGCATGGAACATTAAGGATCGCTCGCCTCCTCCAAATTGGCCTGGTCAAGGCCATGTTGATATCAAAGACTTGCAGGTCAGATATCGTCCAAACACTCCTTTGGTTCTTAAAGGCATTACTTTAAGCATTAGTGGAGGAGAAAAGGTCGGTGTTGTTGGTCGAACGGGGAGTGGAAAATCGACTTTGATTCAGGTTTTCTTCAGGCTGGTGGAACCTACTGGAGGGAAAATAATCATTGATGGCATTGACATATGTGCCTTAGGACTTCATGATCTCAGATCTCGATTCGGTATCATCCCTCAGGAGCCTGTCCTTTTCGAAGGAACTGTCAGAAGTAACATTGATCCAACTGGACAGTATACGGATGATGAGATATGGAAGAGTTTGGATCGTTGTCAGCTAAAAGATACAGTGGCGTCAAAGCCTGAGAAACTTGACTCATTAGTGGTTGACAATGGAGATAACTGGAGTGTGGGGCAGAGGCAGTTGCTGTGTTTAGGGAGGGTTATGCTTAAGCAAAGCAGACTGCTATTTATGGACGAGGCTACAGCTTCTGTTGATTCTCAAACCGATGCTGTAATTCAGAAGATCATCAGAGAAGACTTTGCGGCTCGTACCATCATCAGTATTGCTCATAGGATACCAACGGTCATGGACTGCGATCGAGTGTTGGTTGTAGATGCAGGTCGTGCGAAAGAATTCGACAAACCTTCAAACTTGCTCCAGAGGCAATCGCTCTTTGCAGCTTTGGTTCAAGAGTACGCCAACCGTTCTACTGGATTATAA 4548 0.4028 MSSLDSTWITSLSCSPSSGDAVAAYALPQWLRFIFLSPCPQRALLSAVDVLLLFTLLVFAITKLYSRFTSSNRTHSEEINKPLISNTRALNTRTTLWFKLTLIATIVLTVLYTVGCILVFSSSNVESPWKQLDGLFWVVQAITQLVLVILIIHVKRFEAVVHPLSLRIYWIANFVVVALFTASGVIRLVSLEGSYFFMVDDVVSFVSLPFSLFLLCVGVKGSTGVIKSRDESQLVIDNDEETKLNGYDDHGLNKPNATTGFASASQFSKTFWIWLNPLLSKGYKSPLNIDDVPSLSPQHRAERMSVIFESKWPKSDERSKNPVRVTLLRCFWKDIMFTAFLAVIRLSVMFVGPVLIQNFVDFTSGKGSSVYEGYYLVLILVAAKFVEVLTTHHFNFNSQKLGMLIRCTLITSLYKKGLRLSCSARQDHGVGPIVNYMAVDTQQLSDMMLQLHAVWMMPFQVGIGLFLLYNCLGASALTALVCLLLVIVFIVITTRQNKNYQFQAMISRDSRMKAVNEMLNYMRVIKFQAWENHFNDRILSFRGSEFGWLSKFMYSICGNIIVLWSSPMLISTLTFGTALLLGVRLDAGTVFTTTSVFRILQEPIRTFPQSMISLSQALVSLGRLDRYMSSRELSDDSVERNEGCDGVIAVDVQDGTFSWDDEGLEQDLKNINLKVNKGELTAIVGTVGSGKSSLLASILGEMHRNSGKVQVCGSTAYVAQTSWIQNGTIEENILFGLPMNRQKYNEIIRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGTEIFKECVRGALKGKTIVLVTHQVDFLHNVDRIVVMRDGMIVQSGRYNDLLDSGLDFGVLVAAHETSMELVEQGAAVPGENSNKLMISKSASINNRETNGESNSLDQPNSAKGSSKLVKEEERETGKVSFNIYKRYCTEAFGWAGILAVLFLSVLWQASMMASDYWLAFETSVERAEVFNPVVFISIYAAITIVSVILIVVRSYSVTIFGLKTAQIFFNQILTSILHAPMSFYDTTPSGRILSRASTDQTNVDIFIPLFINFVVAMYITVISIVIITCQNSWPTAFLLIPLVWLNIWYRGYFLSTSRELTRLDSITKAPVIVHFSESISGVMTVRAFRKQKEFRLENFKRVNSNLRMDFHNYSSNAWLGFRLELLGSLVFCLSALFMILLPSNIIKPENVGLSLSYGLSLNSVLFWAIYMSCFIENKMVSVERIKQFSNIPSEAAWNIKDRSPPPNWPGQGHVDIKDLQVRYRPNTPLVLKGITLSISGGEKVGVVGRTGSGKSTLIQVFFRLVEPTGGKIIIDGIDICALGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQYTDDEIWKSLDRCQLKDTVASKPEKLDSLVVDNGDNWSVGQRQLLCLGRVMLKQSRLLFMDEATASVDSQTDAVIQKIIREDFAARTIISIAHRIPTVMDCDRVLVVDAGRAKEFDKPSNLLQRQSLFAALVQEYANRSTGL* 1516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3223 1515 CDD ABC_6TM_ABCC_D1 337 624 IPR044746 GO:0140359
Mtr1g3223 1515 Gene3D - 1256 1507 IPR027417 -
Mtr1g3223 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 650 864 IPR027417 -
Mtr1g3223 1515 Gene3D ABC transporter type 1, transmembrane domain 920 1254 IPR036640 GO:0005524|GO:0016021
Mtr1g3223 1515 Gene3D ABC transporter type 1, transmembrane domain 322 628 IPR036640 GO:0005524|GO:0016021
Mtr1g3223 1515 SUPERFAMILY ABC transporter transmembrane region 953 1253 IPR036640 GO:0005524|GO:0016021
Mtr1g3223 1515 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 337 616 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr1g3223 1515 Pfam ABC transporter transmembrane region 957 1210 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr1g3223 1515 Pfam ABC transporter transmembrane region 337 603 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr1g3223 1515 PANTHER ABC TRANSPORTER C FAMILY MEMBER 4 89 1514 - -
Mtr1g3223 1515 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1273 1507 IPR003439 GO:0005524
Mtr1g3223 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1263 1506 IPR027417 -
Mtr1g3223 1515 MobiDBLite consensus disorder prediction 907 930 - -
Mtr1g3223 1515 Gene3D - 629 890 IPR027417 -
Mtr1g3223 1515 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 89 1514 - -
Mtr1g3223 1515 SMART AAA_5 677 858 IPR003593 -
Mtr1g3223 1515 SMART AAA_5 1299 1483 IPR003593 -
Mtr1g3223 1515 SUPERFAMILY ABC transporter transmembrane region 326 629 IPR036640 GO:0005524|GO:0016021
Mtr1g3223 1515 Pfam ABC transporter 668 801 IPR003439 GO:0005524
Mtr1g3223 1515 Pfam ABC transporter 1290 1438 IPR003439 GO:0005524
Mtr1g3223 1515 CDD ABCC_MRP_domain2 1271 1491 - -
Mtr1g3223 1515 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 650 873 IPR003439 GO:0005524
Mtr1g3223 1515 CDD ABCC_MRP_domain1 650 849 - -
Mtr1g3223 1515 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 957 1236 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr1g3223 1515 MobiDBLite consensus disorder prediction 907 924 - -
Mtr1g3223 1515 CDD ABC_6TM_ABCC_D2 956 1248 IPR044726 GO:0140359
Mtr1g3223 1515 ProSitePatterns ABC transporters family signature. 775 789 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3223 Mtr-Chr1 43501801 43509320 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3223 650 866 Calmodulin-binding Proteins AT2G36910 31.760 2.19e-24 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3223 - K05666 gmx:100793361 2447.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3223 1 43501801 43509320 Mtr1g3223 1 43501801 43509320 ECH